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BaseInfo

ncRNA ID novel_osa_miR2857
Species Oryza sativa
Class miRNA
Genome position Chr6:8005133-8005236 [+]
Reference genome IRGSP-1.0
Source SRR1555747;SRR1556020;SRR1654490
Length 24
Mature sequence(if miRNA) 81 - GAAUAUAGGAAAUGUUAGAAUGGC - 104
Stem-loop(if miRNA) --              UC                    U   AUA  C   UA
  CAUUCUAGCAUUUU  AUAUUCAUAUUGAUGUUAAU AAU   UA AUA  U
  ||||||||||||||  |||||||||||||||||||| |||   || |||
  GUAAGAUUGUAAAG  UAUAAGUGUAACUACAAUUA UUA   AU UAU  A
CG              GA                    C   --G  C   CU
Stem-loop sequence CAUUCUAGCAUUUUUCAUAUUCAUAUUGAUGUUAAUUAAUAUAUACAUAUAUAUCUAUCUAGAUUCAUUAACAUCAAUGUGAAUAUAGGAAAUGUUAGAAUGGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK241705.1
ncRNA:24   CGGUAAGAUUGUAAAGGAUAUAAG   1
  |=||||=||=||||||||||||||
targets:3981   GUCAUUUUAGCAUUUCCUAUAUUC   4004

2.0 Oryza sativa Japonica Group cDNA, clone: J065196L09, full insert sequence NA coding protein psRNATarget
AK289050.1
ncRNA:24   CGGUAAGAUUGUAAAGGAUAUAAG   1
  |==||||||=||||||=|||||||
targets:4371   GUUAUUCUAGCAUUUCUUAUAUUC   4394

2.5 Oryza sativa Japonica Group cDNA, clone: J090092O13, full insert sequence NA coding protein psRNATarget
AK070550.1
ncRNA:24   CGGUAAGAUUGUAAAGGAUAUAAG   1
  |=|||||||=|||||||*||||||
targets:2617   GUCAUUCUAGCAUUUCCCAUAUUC   2640

2.5 Oryza sativa Japonica Group cDNA clone:J023061C04, full insert sequence NA coding protein psRNATarget
XM_015778310.1
ncRNA:24   CGGUAAGAUUGUAAAGGAUAUAAG   1
  |=|||||||*=|||||||||||||
targets:2116   GUCAUUCUAUUAUUUCCUAUAUUC   2139

2.0 PREDICTED: Oryza sativa Japonica Group gamma-glutamyltranspeptidase 1 (LOC4336033), mRNA gamma-glutamyltranspeptidase 1(LOC4336033) coding protein psRNATarget
XM_015788194.1
ncRNA:24   CGGUAAGAUUGUAAAGGAUAUAAG   1
  |=|||||||*|||||||||||||=
targets:1759   GUCAUUCUACCAUUUCCUAUAUUU   1782

2.0 PREDICTED: Oryza sativa Japonica Group embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein (LOC4341015), transcript variant X1, mRNA embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein(LOC4341015) coding protein psRNATarget
XM_015788196.1
ncRNA:24   CGGUAAGAUUGUAAAGGAUAUAAG   1
  |=|||||||*|||||||||||||=
targets:1740   GUCAUUCUACCAUUUCCUAUAUUU   1763

2.0 PREDICTED: Oryza sativa Japonica Group embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein (LOC4341015), transcript variant X3, mRNA embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein(LOC4341015) coding protein psRNATarget
XM_015788195.1
ncRNA:24   CGGUAAGAUUGUAAAGGAUAUAAG   1
  |=|||||||*|||||||||||||=
targets:1729   GUCAUUCUACCAUUUCCUAUAUUU   1752

2.0 PREDICTED: Oryza sativa Japonica Group embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein (LOC4341015), transcript variant X2, mRNA embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein(LOC4341015) coding protein psRNATarget
AK099623.1
ncRNA:24   CGGUAAGAUUGUAAAGGAUAUAAG   1
  |=|||||||=|||||||*||||||
targets:86   GUCAUUCUAGCAUUUCCCAUAUUC   109

2.5 Oryza sativa Japonica Group cDNA clone:J013053G12, full insert sequence NA coding protein psRNATarget
XM_015764199.1
ncRNA:24   CGGUAAGAUUGUAAAGGAUAUAAG   1
  |=|||||||*=||||||||||||=
targets:3717   GUCAUUCUAUUAUUUCCUAUAUUU   3740

3.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4351993 (LOC4351993), transcript variant X2, mRNA uncharacterized LOC4351993(LOC4351993) coding protein psRNATarget
XM_015764200.1
ncRNA:24   CGGUAAGAUUGUAAAGGAUAUAAG   1
  |=|||||||*=||||||||||||=
targets:3418   GUCAUUCUAUUAUUUCCUAUAUUU   3441

3.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4351993 (LOC4351993), transcript variant X3, mRNA uncharacterized LOC4351993(LOC4351993) coding protein psRNATarget
XM_015764201.1
ncRNA:24   CGGUAAGAUUGUAAAGGAUAUAAG   1
  |=|||||||*=||||||||||||=
targets:3416   GUCAUUCUAUUAUUUCCUAUAUUU   3439

3.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4351993 (LOC4351993), transcript variant X4, mRNA uncharacterized LOC4351993(LOC4351993) coding protein psRNATarget
AK103843.1
ncRNA:24   CGGUAAGAUUGUAAAGGAUAUAAG   1
  |=|||||||*=||||||||||||=
targets:3419   GUCAUUCUAUUAUUUCCUAUAUUU   3442

3.0 Oryza sativa Japonica Group cDNA clone:J033148J12, full insert sequence NA coding protein psRNATarget
AK121318.1
ncRNA:24   CGGUAAGAUUGUAAAGGAUAUAAG   1
  |=|||||||*=||||||||||||=
targets:3310   GUCAUUCUAUUAUUUCCUAUAUUU   3333

3.0 Oryza sativa Japonica Group cDNA clone:J023113P04, full insert sequence NA coding protein psRNATarget
XM_015764198.1
ncRNA:24   CGGUAAGAUUGUAAAGGAUAUAAG   1
  |=|||||||*=||||||||||||=
targets:3174   GUCAUUCUAUUAUUUCCUAUAUUU   3197

3.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4351993 (LOC4351993), transcript variant X1, mRNA uncharacterized LOC4351993(LOC4351993) coding protein psRNATarget
AK072022.1
ncRNA:24   CGGUAAGAUUGUAAAGGAUAUAAG   1
  |=|||||||*=||||||||||||=
targets:2178   GUCAUUCUAUUAUUUCCUAUAUUU   2201

3.0 Oryza sativa Japonica Group cDNA clone:J013105F11, full insert sequence NA coding protein psRNATarget
XM_015758389.1
ncRNA:24   CGGUAAGAUUGUAAAGGAUAUAAG   1
  |=|||||*|*||||||||||||||
targets:2127   GUCAUUCAAUCAUUUCCUAUAUUC   2150

2.0 PREDICTED: Oryza sativa Japonica Group protein NRT1/ PTR FAMILY 8.3-like (LOC107276819), mRNA protein NRT1/ PTR FAMILY 8.3-like(LOC107276819) coding protein psRNATarget
AK241906.1
ncRNA:24   CGGUAAGAUU--GUAAAGGAUAUAAG   1
  |=|-||||||--||||||||||||||
targets:372   GUC-UUCUAAUUCAUUUCCUAUAUUC   396

2.5 Oryza sativa Japonica Group cDNA, clone: J075049G22, full insert sequence NA coding protein psRNATarget
XM_015786027.1
ncRNA:24   CGGUAAGAUUGUAAAGGAUAUAAG   1
  *||-|||||=||||*|||||||||
targets:4280   ACC-UUCUAGCAUUGCCUAUAUUC   4302

2.5 PREDICTED: Oryza sativa Japonica Group ABC transporter C family member 8 (LOC9267441), mRNA ABC transporter C family member 8(LOC9267441) coding protein psRNATarget
XM_015766546.1
ncRNA:24   CGGUAAGAUUGUAAAGGAUAUAAG   1
  |*|*|||||=|||||||*||||||
targets:2699   GACUUUCUAGCAUUUCCCAUAUUC   2722

2.5 PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase IRK (LOC4327614), transcript variant X1, mRNA probable LRR receptor-like serine/threonine-protein kinase IRK(LOC4327614) coding protein psRNATarget
XM_015766550.1
ncRNA:24   CGGUAAGAUUGUAAAGGAUAUAAG   1
  |*|*|||||=|||||||*||||||
targets:2699   GACUUUCUAGCAUUUCCCAUAUUC   2722

2.5 PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase IRK (LOC4327614), transcript variant X4, mRNA probable LRR receptor-like serine/threonine-protein kinase IRK(LOC4327614) coding protein psRNATarget
XM_015766551.1
ncRNA:24   CGGUAAGAUUGUAAAGGAUAUAAG   1
  |*|*|||||=|||||||*||||||
targets:2699   GACUUUCUAGCAUUUCCCAUAUUC   2722

2.5 PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase IRK (LOC4327614), transcript variant X5, mRNA probable LRR receptor-like serine/threonine-protein kinase IRK(LOC4327614) coding protein psRNATarget
XM_015766549.1
ncRNA:24   CGGUAAGAUUGUAAAGGAUAUAAG   1
  |*|*|||||=|||||||*||||||
targets:2333   GACUUUCUAGCAUUUCCCAUAUUC   2356

2.5 PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase IRK (LOC4327614), transcript variant X3, mRNA probable LRR receptor-like serine/threonine-protein kinase IRK(LOC4327614) coding protein psRNATarget
XM_015766552.1
ncRNA:24   CGGUAAGAUUGUAAAGGAUAUAAG   1
  |*|*|||||=|||||||*||||||
targets:1719   GACUUUCUAGCAUUUCCCAUAUUC   1742

2.5 PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase IRK (LOC4327614), transcript variant X6, mRNA probable LRR receptor-like serine/threonine-protein kinase IRK(LOC4327614) coding protein psRNATarget
XM_015766553.1
ncRNA:24   CGGUAAGAUUGUAAAGGAUAUAAG   1
  |*|*|||||=|||||||*||||||
targets:529   GACUUUCUAGCAUUUCCCAUAUUC   552

2.5 PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase IRK (LOC4327614), transcript variant X7, mRNA probable LRR receptor-like serine/threonine-protein kinase IRK(LOC4327614) coding protein psRNATarget
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