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BaseInfo

ncRNA ID	novel_osa_miR2855
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:36615514-36615696 [+]
Reference genome	IRGSP-1.0
Source	SRR2040382
Length	24
Mature sequence(if miRNA)	160 - ACUUAAAGCAGUUUGACUUUGACU - 183
Stem-loop(if miRNA)	--     A           C        C       A    C   UA           A    ----AU    UUAGUUUUAUCAAAUCAAUA   UCAAA UUAAAUUGUUU AAGUUUGA UAAGUUU UAGA AAA  UAGUAAUAUUU UAAU      UAAA                    A   ||||| ||||||||||| |||||||| ||||||| |||| |||  ||||||||||| ||||      ||||                    U   AGUUU AGUUUGACGAA UUCAAACU GUUCAAA AUCU UUU  AUCAUUGUAAA GUUG      GUUU                    U UC     C           A        A       C    U   UC           A    GGUUCU    AAAUAAUACUUUUAUAUAAG
Stem-loop sequence	UCAAAAUUAAAUUGUUUCAAGUUUGACUAAGUUUAUAGACAAAUAUAGUAAUAUUUAUAAUAUUAAAUUAGUUUUAUCAAAUCAAUAAUUGAAUAUAUUUUCAUAAUAAAUUUGUCUUGGGUUGAAAAUGUUACUACUUUUUUCUACAAACUUGAUCAAACUUAAAGCAGUUUGACUUUGACU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015755259.1	ncRNA:24   UCAGUUUCAGUUUGACGAAAUUCA   1   =|||||||||||||||=||||||| targets:809   GGUCAAAGUCAAACUGUUUUAAGU   832 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4346670 (LOC4346670), transcript variant X3, mRNA	uncharacterized LOC4346670(LOC4346670)	coding protein	psRNATarget
AK288811.1	ncRNA:24   UCAGUUUCAGUUUGACGAAAUUCA   1   |||=|||||||||=|||||||||| targets:1665   AGUUAAAGUCAAAUUGCUUUAAGU   1688 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090072B06, full insert sequence	NA	coding protein	psRNATarget
AK288203.1	ncRNA:24   UCAGUUUCAGUUUGACGAAAUUCA   1   =||||||||||=|||||||||||| targets:2851   GGUCAAAGUCAGACUGCUUUAAGU   2874 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090008K12, full insert sequence	NA	coding protein	psRNATarget
AK288994.1	ncRNA:24   UCAGUUUCAGUUUGACGAAA-UUCA   1   ||||||||||||||||||||-|||| targets:1366   AGUCAAAGUCAAACUGCUUUUAAGU   1390 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090087P03, full insert sequence	NA	coding protein	psRNATarget
XM_015790283.1	ncRNA:24   UCAGUUUCAGUUUGACGAAAUUCA   1   |||||||||||||||||||*|||| targets:1293   AGUCAAAGUCAAACUGCUUCAAGU   1316 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group anthocyanidin reductase (LOC4343827), mRNA	anthocyanidin reductase(LOC4343827)	coding protein	psRNATarget
AK068259.1	ncRNA:24   UCAGUUUCAGUUUGACGAAAUUCA   1   =|||||||||||||||||||||*| targets:1273   GGUCAAAGUCAAACUGCUUUAAAU   1296 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013149O16, full insert sequence	NA	coding protein	psRNATarget
AK121583.1	ncRNA:24   UCAGUUUCAGUUUGACGAAAUUCA   1   =||||||||||||||||||*|||| targets:279   GGUCAAAGUCAAACUGCUUCAAGU   302 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J033037F21, full insert sequence	NA	coding protein	psRNATarget
XM_015767191.1	ncRNA:24   UCAGUUUCAGUUUGACGAAAUUCA   1   =||||||||||||||||||*|||| targets:334   GGUCAAAGUCAAACUGCUUCAAGU   357 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group disease resistance protein RGA2 (LOC4329024), transcript variant X6, mRNA	disease resistance protein RGA2(LOC4329024)	coding protein	psRNATarget
XM_015767185.1	ncRNA:24   UCAGUUUCAGUUUGACGAAAUUCA   1   =||||||||||||||||||*|||| targets:368   GGUCAAAGUCAAACUGCUUCAAGU   391 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group disease resistance protein RGA2 (LOC4329024), transcript variant X1, mRNA	disease resistance protein RGA2(LOC4329024)	coding protein	psRNATarget
XM_015767192.1	ncRNA:24   UCAGUUUCAGUUUGACGAAAUUCA   1   =||||||||||||||||||*|||| targets:367   GGUCAAAGUCAAACUGCUUCAAGU   390 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group disease resistance protein RGA2 (LOC4329024), transcript variant X7, mRNA	disease resistance protein RGA2(LOC4329024)	coding protein	psRNATarget
XM_015767188.1	ncRNA:24   UCAGUUUCAGUUUGACGAAAUUCA   1   =||||||||||||||||||*|||| targets:1036   GGUCAAAGUCAAACUGCUUCAAGU   1059 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group disease resistance protein RGA2 (LOC4329024), transcript variant X4, mRNA	disease resistance protein RGA2(LOC4329024)	coding protein	psRNATarget
XM_015767187.1	ncRNA:24   UCAGUUUCAGUUUGACGAAAUUCA   1   =||||||||||||||||||*|||| targets:1145   GGUCAAAGUCAAACUGCUUCAAGU   1168 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group disease resistance protein RGA2 (LOC4329024), transcript variant X3, mRNA	disease resistance protein RGA2(LOC4329024)	coding protein	psRNATarget
AK288313.1	ncRNA:24   UCAGUUUCAGUUUGACGAAAUUCA   1   =*|||||||=|||||||||||||| targets:853   GAUCAAAGUUAAACUGCUUUAAGU   876 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090021D10, full insert sequence	NA	coding protein	psRNATarget
CT837874.1	ncRNA:24   UCAGUUUCAGUUUGACGAAAUUCA   1   =||*||||||||||||=||||||| targets:148   GGUGAAAGUCAAACUGUUUUAAGU   171 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN062A18, full insert sequence	NA	coding protein	psRNATarget
AK061217.1	ncRNA:24   UCAGUUUCAGUUUGACGAAAUUCA   1   =||=||||||||||||||||||*| targets:1326   GGUUAAAGUCAAACUGCUUUAAUU   1349 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:006-210-E06, full insert sequence	NA	coding protein	psRNATarget
XM_015776978.1	ncRNA:24   UCAGUUUCAGUUUGACGAAAUUCA   1   =||=||||||||||||||||||*| targets:1504   GGUUAAAGUCAAACUGCUUUAAUU   1527 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group UPF0481 protein At3g47200 (LOC4327921), mRNA	UPF0481 protein At3g47200(LOC4327921)	coding protein	psRNATarget
AK288440.1	ncRNA:24   UCAGUUUCAGUUUGACGAAAUUCA   1   =||||||*||||||||=||||||| targets:1210   GGUCAAAAUCAAACUGUUUUAAGU   1233 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090034G20, full insert sequence	NA	coding protein	psRNATarget
XM_015793424.1	ncRNA:24   UCAGUUUCAGUUUGACGAAA-UUCA   1   =||*||||||||||||||||-|||| targets:1677   GGUGAAAGUCAAACUGCUUUUAAGU   1701 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group UDP-glycosyltransferase 85A2 (LOC4345521), mRNA	UDP-glycosyltransferase 85A2(LOC4345521)	coding protein	psRNATarget
XM_015760540.1	ncRNA:24   UCAGUUUCAGUUUGACGAAAUUCA   1   |**|||||*|||||||=||||||| targets:1046   ACACAAAGACAAACUGUUUUAAGU   1069 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group dirigent protein 19 (LOC4350075), mRNA	dirigent protein 19(LOC4350075)	coding protein	psRNATarget
CT833794.1	ncRNA:24   UCAGUUUCAGUUUGACGAAAUUCA   1   ||--||||||||||||||||||*| targets:466   AG--AAAGUCAAACUGCUUUAAAU   487 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA042F13, full insert sequence	NA	coding protein	psRNATarget