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BaseInfo

ncRNA ID	novel_osa_miR2853
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:25873341-25873409 [+]
Reference genome	IRGSP-1.0
Source	SRR2040382;SRR2040396;SRR1738209;SRR1738211
Length	24
Mature sequence(if miRNA)	46 - UUCAUCGUACUAGAAUAUGUCACA - 69
Stem-loop(if miRNA)	--UA          A          CC     UA     GCAUAUUCUA UACGAUGAAU  GGAUA  G     |||||||||| ||||||||||  |||||  A     UGUAUAAGAU AUGCUACUUA  CCUGU  G ACAC          C          UA     CU
Stem-loop sequence	UAGCAUAUUCUAAUACGAUGAAUCCGGAUAUAGAGUCUGUCCAUAUUCAUCGUACUAGAAUAUGUCACA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK242632.1	ncRNA:24   ACACUGUAUAAGAUCAUGCUACUU   1   |||||||||||||||||||||||| targets:318   UGUGACAUAUUCUAGUACGAUGAA   341 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090022M05, full insert sequence	NA	coding protein	psRNATarget
AK119339.1	ncRNA:24   ACACUGUAUAAGAUCAUGCUACUU   1   ||||||||||||||||||*||||| targets:303   UGUGACAUAUUCUAGUACUAUGAA   326 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:001-131-D05, full insert sequence	NA	coding protein	psRNATarget
XM_015770193.1	ncRNA:24   ACACUGUAUAAGAUCAUGCUACUU   1   ||||||||||||||||||*||||| targets:1071   UGUGACAUAUUCUAGUACUAUGAA   1094 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4329136 (LOC4329136), transcript variant X1, mRNA	uncharacterized LOC4329136(LOC4329136)	coding protein	psRNATarget
AK111475.1	ncRNA:24   ACACUGUAUAAGAUCAUGCUACUU   1   ||||||||||*|||||=||||||| targets:1290   UGUGACAUAUCCUAGUGCGAUGAA   1313 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-183-F05, full insert sequence	NA	coding protein	psRNATarget
AK119335.1	ncRNA:24   ACACUGUAUAAGAUCAUGCUACUU   1   ||||||||||*|||||=||||||| targets:1120   UGUGACAUAUCCUAGUGCGAUGAA   1143 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-131-C06, full insert sequence	NA	coding protein	psRNATarget
AK107495.1	ncRNA:24   ACACUGUAUAAGAUCAUGCUACUU   1   ||*|||||||||||||||*||||| targets:923   UGAGACAUAUUCUAGUACUAUGAA   946 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-129-D07, full insert sequence	NA	coding protein	psRNATarget
AK109681.1	ncRNA:24   ACACUGUAUAAGAUCAUGCUACUU   1   |*|||=|||||||||||||||*|| targets:1685   UAUGAUAUAUUCUAGUACGAUAAA   1708 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-145-D01, full insert sequence	NA	coding protein	psRNATarget
XM_015783505.1	ncRNA:24   ACACUGUAUAAGAUCAUGCUACUU   1   |*|||=|||||||||||||||*|| targets:1678   UAUGAUAUAUUCUAGUACGAUAAA   1701 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group UPF0481 protein At3g47200 (LOC4337710), mRNA	UPF0481 protein At3g47200(LOC4337710)	coding protein	psRNATarget
AK063452.1	ncRNA:24   ACACUGUAUAAGAUCAUGCUACUU   1   *|||||||||*|||||||*||||| targets:112   CGUGACAUAUCCUAGUACUAUGAA   135 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-115-G03, full insert sequence	NA	coding protein	psRNATarget
JB164813.1	ncRNA:24   ACACUGUAUAAGAUCAUGCUACUU   1   ||*||||||*||||||||*||||| targets:43   UGGGACAUAAUCUAGUACAAUGAA   66 Target Full Sequence	2.5	Sequence 2477 from Patent EP2559767	NA	coding protein	psRNATarget
HI404352.1	ncRNA:24   ACACUGUAUAAGAUCAUGCUACUU   1   ||*||||||*||||||||*||||| targets:43   UGGGACAUAAUCUAGUACAAUGAA   66 Target Full Sequence	2.5	Sequence 2477 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236482.1	ncRNA:24   ACACUGUAUAAGAUCAUGCUACUU   1   ||*||||||*||||||||*||||| targets:43   UGGGACAUAAUCUAGUACAAUGAA   66 Target Full Sequence	2.5	Sequence 2477 from Patent EP2985353	NA	coding protein	psRNATarget