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BaseInfo

ncRNA ID	novel_osa_miR2848
Species	Oryza sativa
Class	miRNA
Genome position	Chr12:8732184-8732374 [-]
Reference genome	IRGSP-1.0
Source	SRR2040382
Length	21
Mature sequence(if miRNA)	1 - UUUCACUGACAUGUAGGUGCC - 21
Stem-loop(if miRNA)	--               C   -CCCACGC     U  C   G                  AAAAA               --CUACCU     UUUUUU   CACCUACGUGUUAGU GGA        GUCAA CA AUA AAAAAAUAAAAUUAAAAA     CAUAUUUUCUCUUCU        UAGAA      U   ||||||||||||||| |||        ||||| || ||| ||||||||||||||||||     |||||||||||||||        |||||      U   GUGGAUGUACAGUCA CUU        CAGUU GU UAU UUUUUUAUUUUAAUUUUU     GUAUAAAAGAGGAGA        GUUUU      A CC               -   UAGAUAUA     C  A   A                  ----G               AUCCAUUU     UUUCUA
Stem-loop sequence	CACCUACGUGUUAGUCGGACCCACGCGUCAAUCACAUAGAAAAAAUAAAAUUAAAAAAAAAACAUAUUUUCUCUUCUCUACCUUAGAAUUUUUUUUAAUCUUUUUUUGUUUACCUAAGAGGAGAAAAUAUGGUUUUUAAUUUUAUUUUUUAUAUAUGCUUGACAUAUAGAUUUCACUGACAUGUAGGUGCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK106285.1	ncRNA:21   CCGUGGAUGUACAGUCACUUU   1   |*|=|=*|||||||||||||| targets:643   GACGCUCACAUGUCAGUGAAA   663 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:002-101-A09, full insert sequence	NA	coding protein	psRNATarget
AY277897.2	ncRNA:21   CCGUGGAUGUACAGUCACUUU   1   |*|=|=*|||||||||||||| targets:1083   GACGCUCACAUGUCAGUGAAA   1103 Target Full Sequence	3.0	Oryza sativa (japonica cultivar-group) DNA repair-recombination protein (rad50) mRNA, complete cds	NA	coding protein	psRNATarget
XM_015771295.1	ncRNA:21   CCGUGGAUGUACAGUCACUUU   1   |*|=|=*|||||||||||||| targets:1116   GACGCUCACAUGUCAGUGAAA   1136 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group DNA repair protein RAD50 (LOC4329409), transcript variant X2, mRNA	DNA repair protein RAD50(LOC4329409)	coding protein	psRNATarget
XM_015771294.1	ncRNA:21   CCGUGGAUGUACAGUCACUUU   1   |*|=|=*|||||||||||||| targets:1346   GACGCUCACAUGUCAGUGAAA   1366 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group DNA repair protein RAD50 (LOC4329409), transcript variant X1, mRNA	DNA repair protein RAD50(LOC4329409)	coding protein	psRNATarget