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BaseInfo

ncRNA ID	novel_osa_miR2844
Species	Oryza sativa
Class	miRNA
Genome position	Chr12:22090658-22090830 [-]
Reference genome	IRGSP-1.0
Source	SRR2040382
Length	24
Mature sequence(if miRNA)	150 - ACUUUUUGACCAACGUUUGACCAU - 173
Stem-loop(if miRNA)	--AC      A                 A           UU       C      GAAAA    UAUGUCAUGAUUAAAGAACAU     UUUUUG CCAACGUUUGACCAUUC UUUUAUUCAAA  AUUUGUG AAAUAU     UAUG                     U     |||||| ||||||||||||||||| |||||||||||  ||||||| ||||||     ||||                     U     AAAAAC GGUUGCAAAUUGGUAAG AGAAUAAGUUU  UAAAUAC UUUAUA     UAAA                     U ACUA      A                 C           UU       A      AUAAA    AUAAUACUGAACUAAGUAGUA
Stem-loop sequence	ACUUUUUGACCAACGUUUGACCAUUCAUUUUAUUCAAAUUAUUUGUGCAAAUAUGAAAAUAUGUAUGUCAUGAUUAAAGAACAUUUUAUGAUGAAUCAAGUCAUAAUAAAAUAAAUAAUAUUUACAUAAAUUUUUUGAAUAAGACGAAUGGUUAAACGUUGGACAAAAAAUCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015781390.1	ncRNA:24   UACCAGUUUGCAACCAGUUUUUCA   1   |||||||||||||||||||||||| targets:1442   AUGGUCAAACGUUGGUCAAAAAGU   1465 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4336685 (LOC4336685), transcript variant X2, mRNA	uncharacterized LOC4336685(LOC4336685)	coding protein	psRNATarget
XM_015781389.1	ncRNA:24   UACCAGUUUGCAACCAGUUUUUCA   1   |||||||||||||||||||||||| targets:1442   AUGGUCAAACGUUGGUCAAAAAGU   1465 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4336685 (LOC4336685), transcript variant X1, mRNA	uncharacterized LOC4336685(LOC4336685)	coding protein	psRNATarget
XM_015792366.1	ncRNA:24   UACCAGUUUGCAACCAGUUUUUCA   1   |||||||||||||||||=|||||| targets:844   AUGGUCAAACGUUGGUCGAAAAGU   867 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9271886 (LOC9271886), mRNA	uncharacterized LOC9271886(LOC9271886)	coding protein	psRNATarget
AK287754.1	ncRNA:24   UACCAGUUUGCAACCAGUUUUUCA   1   |||||||||||||||||=|||||| targets:852   AUGGUCAAACGUUGGUCGAAAAGU   875 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J065157N06, full insert sequence	NA	coding protein	psRNATarget
AK105698.1	ncRNA:24   UACCAGUUUGCAACCAGUUUUUCA   1   |||||||||||||||||=|||||| targets:1258   AUGGUCAAACGUUGGUCGAAAAGU   1281 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:001-201-D03, full insert sequence	NA	coding protein	psRNATarget
AK288883.1	ncRNA:24   UACCAGUUUGCAACCAGUUUUUCA   1   |||||=||||||||||=||||||| targets:1071   AUGGUUAAACGUUGGUUAAAAAGU   1094 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090079H22, full insert sequence	NA	coding protein	psRNATarget
HI404014.1	ncRNA:24   UACCAGUUUGCAACCAGUUUUUCA   1   ||*||||||||||||||||||||| targets:176   AUAGUCAAACGUUGGUCAAAAAGU   199 Target Full Sequence	0.0	Sequence 2139 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236144.1	ncRNA:24   UACCAGUUUGCAACCAGUUUUUCA   1   ||*||||||||||||||||||||| targets:176   AUAGUCAAACGUUGGUCAAAAAGU   199 Target Full Sequence	0.0	Sequence 2139 from Patent EP2985353	NA	coding protein	psRNATarget
JB164475.1	ncRNA:24   UACCAGUUUGCAACCAGUUUUUCA   1   ||*||||||||||||||||||||| targets:176   AUAGUCAAACGUUGGUCAAAAAGU   199 Target Full Sequence	0.0	Sequence 2139 from Patent EP2559767	NA	coding protein	psRNATarget
CT834259.1	ncRNA:24   UACCAGUUUGCAACCAGUUUUUCA   1   |||*||||||||||||=||||||| targets:837   AUGAUCAAACGUUGGUUAAAAAGU   860 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA044D20, full insert sequence	NA	coding protein	psRNATarget
XM_015788430.1	ncRNA:24   UACCAGUUUGCAACCAGUUUUUCA   1   |||*||||||||||||=||||||| targets:1481   AUGAUCAAACGUUGGUUAAAAAGU   1504 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group 12-oxophytodienoate reductase 1 (LOC4340490), transcript variant X3, mRNA	12-oxophytodienoate reductase 1(LOC4340490)	coding protein	psRNATarget
XM_015788428.1	ncRNA:24   UACCAGUUUGCAACCAGUUUUUCA   1   |||*||||||||||||=||||||| targets:1623   AUGAUCAAACGUUGGUUAAAAAGU   1646 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group 12-oxophytodienoate reductase 1 (LOC4340490), transcript variant X1, mRNA	12-oxophytodienoate reductase 1(LOC4340490)	coding protein	psRNATarget
AK288901.1	ncRNA:24   UACCAGUUUGCAACCAGUUUUUCA   1   ||||||||||*|||||=||||||| targets:449   AUGGUCAAACAUUGGUUAAAAAGU   472 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090080K21, full insert sequence	NA	coding protein	psRNATarget
CT835080.1	ncRNA:24   UACCAGUUUGCAACCAGUUUUUCA   1   |*|||||||||||*|||||||||| targets:1132   AAGGUCAAACGUUUGUCAAAAAGU   1155 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN071I07, full insert sequence	NA	coding protein	psRNATarget
AK288703.1	ncRNA:24   UACCAGUUUGCAACCAGUUUUUCA   1   |*|*|||||=|||*|||||||||| targets:3205   AAGAUCAAAUGUUUGUCAAAAAGU   3228 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090061G13, full insert sequence	NA	coding protein	psRNATarget