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BaseInfo

ncRNA ID	novel_osa_miR2843
Species	Oryza sativa
Class	miRNA
Genome position	Chr10:17869140-17869314 [-]
Reference genome	IRGSP-1.0
Source	SRR2040382;SRR2040387;SRR2040388
Length	24
Mature sequence(if miRNA)	1 - GUCAAACGUUGGACGAAAAGUCAA - 24
Stem-loop(if miRNA)	--         A                            UUUU      ---------------A      GAAAAUAUUUAUGUUAUGCUUAA   GACUUUUUG CCAACGUUUGACCAUUCGUUUUAUUCAA    UUUGUG                AAAUAU                       A   ||||||||| ||||||||||||||||||||||||||||    ||||||                ||||||   CUGAAAAGC GGUUGCAAACUGGUAAGCAGAAUAAGUU    AAAUAC                AUAAUA                       G AA         A                            UUUU      AUUAAUAAUAAAUAAA      CUGAACUAAAUAGUAGUUUACAA
Stem-loop sequence	GACUUUUUGACCAACGUUUGACCAUUCGUUUUAUUCAAUUUUUUUGUGAAAAUAUGAAAAUAUUUAUGUUAUGCUUAAAGAACAUUUGAUGAUAAAUCAAGUCAUAAUAAAAUAAAUAAUAAUUACAUAAAUUUUUUGAAUAAGACGAAUGGUCAAACGUUGGACGAAAAGUCAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK103228.1	ncRNA:24   AACUGAAAAGCAGGUUGCAAACUG   1   ||||=||||=|||||||||||||| targets:2639   UUGAUUUUUUGUCCAACGUUUGAC   2662 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J033123C21, full insert sequence	NA	coding protein	psRNATarget
AK288290.1	ncRNA:24   AACUGAAAAGCAGGUUGCAAACUG   1   |||||||||||*|||||||||||| targets:1605   UUGACUUUUCGACCAACGUUUGAC   1628 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090019D06, full insert sequence	NA	coding protein	psRNATarget
XM_015781389.1	ncRNA:24   AACUGAAAAGCAGGUUGCAAACUG   1   |||||||||=*||||||||||||| targets:1292   UUGACUUUUUAUCCAACGUUUGAC   1315 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4336685 (LOC4336685), transcript variant X1, mRNA	uncharacterized LOC4336685(LOC4336685)	coding protein	psRNATarget
XM_015781390.1	ncRNA:24   AACUGAAAAGCAGGUUGCAAACUG   1   |||||||||=*||||||||||||| targets:1292   UUGACUUUUUAUCCAACGUUUGAC   1315 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4336685 (LOC4336685), transcript variant X2, mRNA	uncharacterized LOC4336685(LOC4336685)	coding protein	psRNATarget
XM_015779878.1	ncRNA:24   AACUGAAAAGCAGGUUGCAAACUG   1   |||||||||=|*|||||||||||| targets:189   UUGACUUUUUGACCAACGUUUGAC   212 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group AT-hook motif nuclear-localized protein 9 (LOC4337449), mRNA	AT-hook motif nuclear-localized protein 9(LOC4337449)	coding protein	psRNATarget
CT829159.1	ncRNA:24   AACUGAAAAGCAGGUUGCAAACUG   1   ||*||||||=|||||||||||||| targets:878   UUCACUUUUUGUCCAACGUUUGAC   901 Target Full Sequence	1.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN009P22, full insert sequence	NA	coding protein	psRNATarget
AK121277.1	ncRNA:24   AACUGAAAAGCAGGUUGCAAACUG   1   ||||=||||||*|||||||||||| targets:724   UUGAUUUUUCGACCAACGUUUGAC   747 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023108A04, full insert sequence	NA	coding protein	psRNATarget
AK288382.1	ncRNA:24   AACUGAAAAGCAGGUUGCAAACUG   1   ||||=||||||*|||||||||||* targets:1393   UUGAUUUUUCGACCAACGUUUGAG   1416 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090026M23, full insert sequence	NA	coding protein	psRNATarget
XM_015769406.1	ncRNA:24   AACUGAAAAGCAGGUUGCAAACUG   1   ||||||||||**|||||||||||| targets:1498   UUGACUUUUCAACCAACGUUUGAC   1521 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107278559 (LOC107278559), mRNA	uncharacterized LOC107278559(LOC107278559)	coding protein	psRNATarget