Search result

BaseInfo

ncRNA ID novel_osa_miR2842
Species Oryza sativa
Class miRNA
Genome position Chr12:20104244-20104378 [+]
Reference genome IRGSP-1.0
Source SRR2040382
Length 23
Mature sequence(if miRNA) 1 - GAAGUUUAUGUGUAUAGGAAAGU - 23
Stem-loop(if miRNA) --       A     A                              --AA   UAAACCAGGCCUUAG
  GAAGUUU UGUGU UAGGAAAGUUUUGAUGUGAUGGAAAAGUUG    AAC               U
  ||||||| ||||| ||||||||||||||||||||||||||||||    |||               U
  CUUCAAA ACACA AUCUUUUUAAAGCUACACUACCUUUUCAAC    AAA               C
AC       C     C                              CUUC   CUUCUUUUUUAAAAU
Stem-loop sequence GAAGUUUAUGUGUAUAGGAAAGUUUUGAUGUGAUGGAAAAGUUGAAAACUAAACCAGGCCUUAGUUCUAAAAUUUUUUCUUCAAACUUCCAACUUUUCCAUCACAUCGAAAUUUUUCUACACACACAAACUUCCA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK288499.1
ncRNA:23   UGAAAGGAUAUGUGUAUUUGAAG   1
  |||||||||||||||||||||||
targets:800   ACUUUCCUAUACACAUAAACUUC   822

0.0 Oryza sativa Japonica Group cDNA, clone: J090041C09, full insert sequence NA coding protein psRNATarget
AK119988.1
ncRNA:23   UGAAAGGAUAUGUGUAUUUGAAG   1
  |=||||||||||||=||||||||
targets:706   AUUUUCCUAUACACGUAAACUUC   728

1.5 Oryza sativa Japonica Group cDNA clone:002-184-G03, full insert sequence NA coding protein psRNATarget
AK289097.1
ncRNA:23   UGAAAGGAUAUGUGUAUUUGAAG   1
  |||||||||*|||||||||||||
targets:1236   ACUUUCCUACACACAUAAACUUC   1258

1.0 Oryza sativa Japonica Group cDNA, clone: J090096D18, full insert sequence NA coding protein psRNATarget
XM_015786549.1
ncRNA:23   UGAAAGGAUAUGUGUAUUUGAAG   1
  |||||||||*||||||||||||=
targets:501   ACUUUCCUACACACAUAAACUUU   523

2.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4341606 (LOC4341606), mRNA uncharacterized LOC4341606(LOC4341606) coding protein psRNATarget
AK242656.1
ncRNA:23   UGAAAGGAUAUGUGUAUUUGAAG   1
  |||||=|||||||||*|||||||
targets:1242   ACUUUUCUAUACACACAAACUUC   1264

2.5 Oryza sativa Japonica Group cDNA, clone: J090026P04, full insert sequence NA coding protein psRNATarget
XM_015791683.1
ncRNA:23   UGAAAGGAUAUGUGUAUUUGAAG   1
  |||||||||*|=|||||||||||
targets:428   ACUUUCCUACAUACAUAAACUUC   450

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4324388 (LOC4324388), mRNA uncharacterized LOC4324388(LOC4324388) coding protein psRNATarget
XM_015772873.1
ncRNA:23   UGAAAGGAUAUGUGUAUUUGAAG   1
  |||||||||*||||||||||||=
targets:297   ACUUUCCUACACACAUAAACUUU   319

2.0 PREDICTED: Oryza sativa Japonica Group putative pentatricopeptide repeat-containing protein At1g77010, mitochondrial (LOC4334787), transcript variant X2, mRNA putative pentatricopeptide repeat-containing protein At1g77010, mitochondrial(LOC4334787) coding protein psRNATarget
XM_015772878.1
ncRNA:23   UGAAAGGAUAUGUGUAUUUGAAG   1
  |||||||||*||||||||||||=
targets:446   ACUUUCCUACACACAUAAACUUU   468

2.0 PREDICTED: Oryza sativa Japonica Group putative pentatricopeptide repeat-containing protein At1g77010, mitochondrial (LOC4334787), transcript variant X6, mRNA putative pentatricopeptide repeat-containing protein At1g77010, mitochondrial(LOC4334787) coding protein psRNATarget
AK119368.1
ncRNA:23   UGAAAGGAUAUGUGUAUUUGAAG   1
  |||||=|||*|||||||||||||
targets:1151   ACUUUUCUACACACAUAAACUUC   1173

2.0 Oryza sativa Japonica Group cDNA clone:001-131-H06, full insert sequence NA coding protein psRNATarget
XM_015772874.1
ncRNA:23   UGAAAGGAUAUGUGUAUUUGAAG   1
  |||||||||*||||||||||||=
targets:1366   ACUUUCCUACACACAUAAACUUU   1388

2.0 PREDICTED: Oryza sativa Japonica Group putative pentatricopeptide repeat-containing protein At1g77010, mitochondrial (LOC4334787), transcript variant X3, mRNA putative pentatricopeptide repeat-containing protein At1g77010, mitochondrial(LOC4334787) coding protein psRNATarget
XM_015772872.1
ncRNA:23   UGAAAGGAUAUGUGUAUUUGAAG   1
  |||||||||*||||||||||||=
targets:2017   ACUUUCCUACACACAUAAACUUU   2039

2.0 PREDICTED: Oryza sativa Japonica Group putative pentatricopeptide repeat-containing protein At1g77010, mitochondrial (LOC4334787), transcript variant X1, mRNA putative pentatricopeptide repeat-containing protein At1g77010, mitochondrial(LOC4334787) coding protein psRNATarget
AK288858.1
ncRNA:23   UGAAAGGAUAUGUGUAUUUGAAG   1
  |||||||||*||||||||||||=
targets:2695   ACUUUCCUACACACAUAAACUUU   2717

2.0 Oryza sativa Japonica Group cDNA, clone: J090076F15, full insert sequence NA coding protein psRNATarget
XM_015772877.1
ncRNA:23   UGAAAGGAUAUGUGUAUUUGAAG   1
  |||||||||*||||||||||||=
targets:2017   ACUUUCCUACACACAUAAACUUU   2039

2.0 PREDICTED: Oryza sativa Japonica Group putative pentatricopeptide repeat-containing protein At1g77010, mitochondrial (LOC4334787), transcript variant X5, mRNA putative pentatricopeptide repeat-containing protein At1g77010, mitochondrial(LOC4334787) coding protein psRNATarget
XM_015772876.1
ncRNA:23   UGAAAGGAUAUGUGUAUUUGAAG   1
  |||||||||*||||||||||||=
targets:2017   ACUUUCCUACACACAUAAACUUU   2039

2.0 PREDICTED: Oryza sativa Japonica Group putative pentatricopeptide repeat-containing protein At1g77010, mitochondrial (LOC4334787), transcript variant X4, mRNA putative pentatricopeptide repeat-containing protein At1g77010, mitochondrial(LOC4334787) coding protein psRNATarget
AK288209.1
ncRNA:23   UGAAAGGAUAUGUGUAUUUGAAG   1
  |=|||||||*|||||||||||||
targets:741   AUUUUCCUACACACAUAAACUUC   763

1.0 Oryza sativa Japonica Group cDNA, clone: J090009E19, full insert sequence NA coding protein psRNATarget
XM_015763266.1
ncRNA:23   UGAAAGGAUAUGUGUAUUUGAAG   1
  |||||||||*||||||||||||=
targets:2689   ACUUUCCUACACACAUAAACUUU   2711

2.0 PREDICTED: Oryza sativa Japonica Group probable galacturonosyltransferase 7 (LOC4351364), transcript variant X2, mRNA probable galacturonosyltransferase 7(LOC4351364) coding protein psRNATarget
XM_015763265.1
ncRNA:23   UGAAAGGAUAUGUGUAUUUGAAG   1
  |||||||||*||||||||||||=
targets:2689   ACUUUCCUACACACAUAAACUUU   2711

2.0 PREDICTED: Oryza sativa Japonica Group probable galacturonosyltransferase 7 (LOC4351364), transcript variant X1, mRNA probable galacturonosyltransferase 7(LOC4351364) coding protein psRNATarget
CT830812.1
ncRNA:23   UGAAAGGAUAUGUGUAUUUGAAG   1
  |=|||=|||*|||||||||||||
targets:510   AUUUUUCUACACACAUAAACUUC   532

2.0 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA243I15, full insert sequence NA coding protein psRNATarget
AK241616.1
ncRNA:23   UGAAAGGAUAUGUGUAUUUGAAG   1
  |=|||=|||*|||||||||||||
targets:770   AUUUUUCUACACACAUAAACUUC   792

2.0 Oryza sativa Japonica Group cDNA, clone: J065186D23, full insert sequence NA coding protein psRNATarget
AK288631.1
ncRNA:23   UGAAAGGAUAUGUGUAUUUGAAG   1
  |*|||=|||||=|||||||||||
targets:3187   AAUUUUCUAUAUACAUAAACUUC   3209

2.5 Oryza sativa Japonica Group cDNA, clone: J090055C12, full insert sequence NA coding protein psRNATarget
LQ236180.1
ncRNA:23   UGAAAGGAUAUGUGUAUUUGAAG   1
  |||||||||*|||||*|||||||
targets:276   ACUUUCCUACACACACAAACUUC   298

2.5 Sequence 2175 from Patent EP2985353 NA coding protein psRNATarget
JB164511.1
ncRNA:23   UGAAAGGAUAUGUGUAUUUGAAG   1
  |||||||||*|||||*|||||||
targets:276   ACUUUCCUACACACACAAACUUC   298

2.5 Sequence 2175 from Patent EP2559767 NA coding protein psRNATarget
HI404050.1
ncRNA:23   UGAAAGGAUAUGUGUAUUUGAAG   1
  |||||||||*|||||*|||||||
targets:276   ACUUUCCUACACACACAAACUUC   298

2.5 Sequence 2175 from Patent EP2074227 NA coding protein psRNATarget
AK067773.1
ncRNA:23   UGAAAGGAUAUGUGUAUUUGAAG   1
  |||||||||*|||||*|||||||
targets:673   ACUUUCCUACACACACAAACUUC   695

2.5 Oryza sativa Japonica Group cDNA clone:J013118K04, full insert sequence NA coding protein psRNATarget
AK242132.1
ncRNA:23   UGAAAGGAUAUGUGUAUUUGAAG   1
  |||||||||*|||||*|||||||
targets:467   ACUUUCCUACACACACAAACUUC   489

2.5 Oryza sativa Japonica Group cDNA, clone: J075149D21, full insert sequence NA coding protein psRNATarget
XM_015767117.1
ncRNA:23   UGAAAGGAUAUGUGUAUUUGAAG   1
  |||||||||*|||||*|||||||
targets:1130   ACUUUCCUACACACACAAACUUC   1152

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9266427 (LOC9266427), transcript variant X8, mRNA uncharacterized LOC9266427(LOC9266427) coding protein psRNATarget
XM_015774001.1
ncRNA:23   UGAAAGGAUAUGUGUAUUUGAAG   1
  |||||||||*|||||||||||*|
targets:1415   ACUUUCCUACACACAUAAACUAC   1437

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9271954 (LOC9271954), mRNA uncharacterized LOC9271954(LOC9271954) coding protein psRNATarget
AK109742.1
ncRNA:23   UGAAAGGAUAUGUGUAUUUGAAG   1
  |||||||||*|||||||||||*|
targets:1173   ACUUUCCUACACACAUAAACUCC   1195

2.5 Oryza sativa Japonica Group cDNA clone:002-146-E05, full insert sequence NA coding protein psRNATarget
AK288889.1
ncRNA:23   UGAAAGGAUAUGUGUAUUUGAAG   1
  |||||||||*|||||*|||||||
targets:228   ACUUUCCUACACACACAAACUUC   250

2.5 Oryza sativa Japonica Group cDNA, clone: J090080B10, full insert sequence NA coding protein psRNATarget
AK066274.1
ncRNA:23   UGAAAGGAUAUGUGUAUUUGAAG   1
  |||||||||*|||||*|||||||
targets:875   ACUUUCCUACACACACAAACUUC   897

2.5 Oryza sativa Japonica Group cDNA clone:J013061O18, full insert sequence NA coding protein psRNATarget
AK102901.1
ncRNA:23   UGAAAGGAUAUGUGUAUUUGAAG   1
  |||||||||*|||||||||||*|
targets:1029   ACUUUCCUACACACAUAAACUCC   1051

2.5 Oryza sativa Japonica Group cDNA clone:J033113C20, full insert sequence NA coding protein psRNATarget
CT830879.1
ncRNA:23   UGAAAGGAUAUGUGUAUUUGAAG   1
  |||||||||*|||||||||||*|
targets:1168   ACUUUCCUACACACAUAAACUCC   1190

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA109G24, full insert sequence NA coding protein psRNATarget
AK106655.1
ncRNA:23   UGAAAGGAUAUGUGUAUUUGAAG   1
  |||||=*||*|||||||||||||
targets:698   ACUUUUAUACACACAUAAACUUC   720

3.0 Oryza sativa Japonica Group cDNA clone:002-113-G04, full insert sequence NA coding protein psRNATarget
CT829408.1
ncRNA:23   UGAAAGGAUAUGUGUAUUUGAAG   1
  ||||||*||*||||||||||||=
targets:1055   ACUUUCAUACACACAUAAACUUU   1077

3.0 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA113B20, full insert sequence NA coding protein psRNATarget
AK109584.1
ncRNA:23   UGAAAGGAUAUGUGUAUUUGAAG   1
  |||||=*||*|||||||||||||
targets:665   ACUUUUAUACACACAUAAACUUC   687

3.0 Oryza sativa Japonica Group cDNA clone:002-137-A10, full insert sequence NA coding protein psRNATarget
AK066059.1
ncRNA:23   UGAAAGGAUAUGUGUAUUUGAAG   1
  ||*||||||*||||||||||||=
targets:481   ACCUUCCUACACACAUAAACUUU   503

2.0 Oryza sativa Japonica Group cDNA clone:J013053C20, full insert sequence NA coding protein psRNATarget
AK288606.1
ncRNA:23   UGAAAGGAUAUGUGUAUUUGAAG   1
  |||||=*||*|||||||||||||
targets:2074   ACUUUUAUACACACAUAAACUUC   2096

3.0 Oryza sativa Japonica Group cDNA, clone: J090052P16, full insert sequence NA coding protein psRNATarget
XM_015766955.1
ncRNA:23   UGAAAGGAUAUGUGUAUUUGAAG   1
  |**||*|||||||||||||=|||
targets:3082   AGAUUACUAUACACAUAAAUUUC   3104

2.5 PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At4g32450, mitochondrial (LOC4327881), transcript variant X1, mRNA pentatricopeptide repeat-containing protein At4g32450, mitochondrial(LOC4327881) coding protein psRNATarget
XM_015758644.1
ncRNA:23   UGAAAGGAUAUGUGUAUUUGAAG   1
  =**|||=*||||||||||||||=
targets:4796   GGAUUCUAAUACACAUAAACUUU   4818

3.0 PREDICTED: Oryza sativa Japonica Group acetyl-CoA carboxylase 1 (LOC4348450), transcript variant X2, mRNA acetyl-CoA carboxylase 1(LOC4348450) coding protein psRNATarget
XM_015758643.1
ncRNA:23   UGAAAGGAUAUGUGUAUUUGAAG   1
  =**|||=*||||||||||||||=
targets:4799   GGAUUCUAAUACACAUAAACUUU   4821

3.0 PREDICTED: Oryza sativa Japonica Group acetyl-CoA carboxylase 1 (LOC4348450), transcript variant X1, mRNA acetyl-CoA carboxylase 1(LOC4348450) coding protein psRNATarget
© 2017 OPP-ncRBASE. All rights reserved.