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BaseInfo

ncRNA ID	novel_osa_miR2841
Species	Oryza sativa
Class	miRNA
Genome position	Chr6:4494233-4494319 [-]
Reference genome	IRGSP-1.0
Source	SRR1555747;SRR2098822;SRR1555751;SRR2099436;SRR2099567;SRR2099568;SRR2099745;SRR4407775;SRR4407779;SRR4407953;SRR4407954;SRR4407956;SRR4407958;SRR4407959;SRR4407961;SRR4407962;SRR1556018;SRR1556020;SRR1654490;SRR1654491
Length	24
Mature sequence(if miRNA)	1 - AGAAGUUGGUUUUUUAUGGGACGG - 24
Stem-loop(if miRNA)	--      A      AGA         -     U         CA   GUCCCA AAAAAA   UAACUUCUG AGAUG ACUUGGACA  U   |||||| ||||||   ||||||||| ||||| |||||||||   CAGGGU UUUUUU   GUUGAAGAC UCUAU UGGACCUGU  G GG      A      --G         A     U         UC
Stem-loop sequence	GUCCCAAAAAAAAAGAUAACUUCUGAGAUGUACUUGGACACAUGCUUGUCCAGGUUUAUCUACAGAAGUUGGUUUUUUAUGGGACGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015760538.1	ncRNA:24   GGCAGGGUAUUUUUUGGUUGAAGA   1   |||||||||||||||||||||||| targets:898   CCGUCCCAUAAAAAACCAACUUCU   921 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4349813 (LOC4349813), transcript variant X1, mRNA	uncharacterized LOC4349813(LOC4349813)	coding protein	psRNATarget
XM_015780739.1	ncRNA:24   GGCAGGGUAUUUUUUGGUUGAAGA   1   =|||||||||||||||||||||** targets:852   UCGUCCCAUAAAAAACCAACUUAG   875 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group UPF0548 protein At2g17695 (LOC4334967), transcript variant X3, mRNA	UPF0548 protein At2g17695(LOC4334967)	coding protein	psRNATarget
XM_015780740.1	ncRNA:24   GGCAGGGUAUUUUUUGGUUGAAGA   1   =|||||||||||||||||||||** targets:852   UCGUCCCAUAAAAAACCAACUUAG   875 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group UPF0548 protein At2g17695 (LOC4334967), transcript variant X4, mRNA	UPF0548 protein At2g17695(LOC4334967)	coding protein	psRNATarget
XM_015780738.1	ncRNA:24   GGCAGGGUAUUUUUUGGUUGAAGA   1   =|||||||||||||||||||||** targets:852   UCGUCCCAUAAAAAACCAACUUAG   875 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group UPF0548 protein At2g17695 (LOC4334967), transcript variant X2, mRNA	UPF0548 protein At2g17695(LOC4334967)	coding protein	psRNATarget
XM_015793191.1	ncRNA:24   GGCAGGGUAUUU-UUUGGUUGAAGA   1   ||*|||||||||-|||||||||||| targets:1762   CCAUCCCAUAAAGAAACCAACUUCU   1786 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group probable receptor-like protein kinase At1g67000 (LOC4327950), transcript variant X1, mRNA	probable receptor-like protein kinase At1g67000(LOC4327950)	coding protein	psRNATarget
AK241482.1	ncRNA:24   GGCAGGGUAUUU-UUUGGUUGAAGA   1   ||*|||||||||-|||||||||||| targets:1154   CCAUCCCAUAAAGAAACCAACUUCU   1178 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J065166H14, full insert sequence	NA	coding protein	psRNATarget
AK059729.1	ncRNA:24   GGCAGGGUAUUUUUUGGUUGAAGA   1   ==||||||*||*|||||||||||| targets:1120   UUGUCCCAAAAUAAACCAACUUCU   1143 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:006-201-E08, full insert sequence	NA	coding protein	psRNATarget
AK288372.1	ncRNA:24   GGCAGGGUAUUUUUUGGUUGAAGA   1   ==||||*|*|=||||||||||||| targets:1182   UUGUCCAACAGAAAACCAACUUCU   1205 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090026F05, full insert sequence	NA	coding protein	psRNATarget
AK289026.1	ncRNA:24   GGCAGGGUAUUUUUUGGUUGAAGA   1   *****||||||||||||||||||* targets:2650   AAAAGCCAUAAAAAACCAACUUCA   2673 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090090K24, full insert sequence	NA	coding protein	psRNATarget