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BaseInfo

ncRNA ID	novel_osa_miR2840
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:38504877-38504935 [+]
Reference genome	IRGSP-1.0
Source	SRR2040381;SRR2040391;SRR5049778
Length	22
Mature sequence(if miRNA)	38 - UUAUAUUUUUGUGAGAGAGACU - 59
Stem-loop(if miRNA)	-U  -                   UC      UC CUCUCACAAAAAUAUAAGU  CUAU   || |||||||||||||||||||  |||U   AG GAGAGUGUUUUUAUAUUCA  GAUA UC  A                   GA
Stem-loop sequence	UUCCUCUCACAAAAAUAUAAGUUCCUAUUAUAGAGACUUAUAUUUUUGUGAGAGAGACU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015771989.1	ncRNA:22   UCAGAGAGAGUGUUUUUAUAUU   1   ||||*||||||||||||||||| targets:2070   AGUCCCUCUCACAAAAAUAUAA   2091 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group ceramide kinase (LOC4330198), transcript variant X4, mRNA	ceramide kinase(LOC4330198)	coding protein	psRNATarget
XM_015771988.1	ncRNA:22   UCAGAGAGAGUGUUUUUAUAUU   1   ||||*||||||||||||||||| targets:2167   AGUCCCUCUCACAAAAAUAUAA   2188 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group ceramide kinase (LOC4330198), transcript variant X3, mRNA	ceramide kinase(LOC4330198)	coding protein	psRNATarget
FJ765452.1	ncRNA:22   UCAGAGAGAGUGUUUUUAUAUU   1   ||||*||||||||||||||||| targets:2176   AGUCCCUCUCACAAAAAUAUAA   2197 Target Full Sequence	1.0	Oryza sativa Japonica Group ceramide kinase mRNA, complete cds	NA	coding protein	psRNATarget
XM_015771987.1	ncRNA:22   UCAGAGAGAGUGUUUUUAUAUU   1   ||||*||||||||||||||||| targets:2198   AGUCCCUCUCACAAAAAUAUAA   2219 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group ceramide kinase (LOC4330198), transcript variant X2, mRNA	ceramide kinase(LOC4330198)	coding protein	psRNATarget
XM_015771986.1	ncRNA:22   UCAGAGAGAGUGUUUUUAUAUU   1   ||||*||||||||||||||||| targets:2260   AGUCCCUCUCACAAAAAUAUAA   2281 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group ceramide kinase (LOC4330198), transcript variant X1, mRNA	ceramide kinase(LOC4330198)	coding protein	psRNATarget
FJ750944.1	ncRNA:22   UCAGAGAGAGUGUUUUUAUAUU   1   |||=*||||||||||||||||| targets:1161   AGUUCCUCUCACAAAAAUAUAA   1182 Target Full Sequence	2.0	Oryza sativa clone KCS020C02 MADS-box transcription factor 21 mRNA, complete cds	NA	coding protein	psRNATarget
AK070958.1	ncRNA:22   UCAGAGAGAGUGUUUUUAUAUU   1   |||=*||||||||||||||||| targets:1195   AGUUCCUCUCACAAAAAUAUAA   1216 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J023065L09, full insert sequence	NA	coding protein	psRNATarget
XM_015765696.1	ncRNA:22   UCAGAGAGAGUGUUUUUAUAUU   1   |||=*||||||||||||||||| targets:1194   AGUUCCUCUCACAAAAAUAUAA   1215 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group MADS-box transcription factor 21 (LOC4324888), mRNA	MADS-box transcription factor 21(LOC4324888)	coding protein	psRNATarget
XM_015787235.1	ncRNA:22   UCAGAGAGAGUGUUUUUAUAUU   1   ||||*||||||||||||*|||| targets:576   AGUCCCUCUCACAAAAACAUAA   597 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107278615 (LOC107278615), mRNA	uncharacterized LOC107278615(LOC107278615)	coding protein	psRNATarget