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BaseInfo

ncRNA ID novel_osa_miR2839
Species Oryza sativa
Class miRNA
Genome position Chr12:16062408-16062565 [-]
Reference genome IRGSP-1.0
Source SRR2040381;SRR2040391;SRR2040401
Length 24
Mature sequence(if miRNA) 1 - AGACGGACAGUCAAACAUUGGCAC - 24
Stem-loop(if miRNA) -- U    C       C           UUAAAA  ---  --- AUGAAAAAAUUUAAAAAGAUAAGUCACGUAUAAAGUAUU
  G CCAA GUUUGAC GUUCGUCUUAU      AA   AU   U                                       A
  | |||| ||||||| |||||||||||      ||   ||   |                                       A
  C GGUU CAAACUG CAGGCAGAAUA      CU   AG   A                                       U
CA -    A       A           ----UA  UAA  AAA UAUUAAUCAUAAAAAUAACAACAAUCUACUAUUUUGUAC
Stem-loop sequence GUCCAACGUUUGACCGUUCGUCUUAUUUAAAAAAAUUAUGAAAAAAUUUAAAAAGAUAAGUCACGUAUAAAGUAUUAAUCAUGUUUUAUCAUCUAACAACAAUAAAAAUACUAAUUAUAAAAGAAAUUCAUAUAAGACGGACAGUCAAACAUUGGCAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_015784718.1
ncRNA:24   CAC-GGUUACAAACUGACAGGCAGA   1
  |||-|||||||||||||||||||||
targets:1392   GUGUCCAAUGUUUGACUGUCCGUCU   1416

0.0 PREDICTED: Oryza sativa Japonica Group basic 7S globulin (LOC4326528), mRNA basic 7S globulin(LOC4326528) coding protein psRNATarget
XM_015764917.1
ncRNA:24   CACGGUUACAAACUGACAGGCAGA   1
  |||||||*||||||||||||||||
targets:2784   GUGCCAACGUUUGACUGUCCGUCU   2807

1.0 PREDICTED: Oryza sativa Japonica Group translocase of chloroplast 90, chloroplastic (LOC4351723), mRNA translocase of chloroplast 90, chloroplastic(LOC4351723) coding protein psRNATarget
CT833626.1
ncRNA:24   CACGG-UUACAAACUGACAGGCAGA   1
  |||=|-|||||||||||||||||||
targets:1078   GUGUCUAAUGUUUGACUGUCCGUCU   1102

2.0 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN067K22, full insert sequence NA coding protein psRNATarget
XM_015772621.1
ncRNA:24   CAC-GGUUACAAACUGACAGGCAGA   1
  |||-||||*||||||||||||||||
targets:407   GUGUCCAACGUUUGACUGUCCGUCU   431

1.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4332894 (LOC4332894), mRNA uncharacterized LOC4332894(LOC4332894) coding protein psRNATarget
XM_015771325.1
ncRNA:24   CAC-GGUUACAAACUGACAGGCAGA   1
  |||-||||*||||||||||||||||
targets:1216   GUGUCCAACGUUUGACUGUCCGUCU   1240

1.0 PREDICTED: Oryza sativa Japonica Group protein synthesis inhibitor I (LOC4324068), mRNA protein synthesis inhibitor I(LOC4324068) coding protein psRNATarget
AK287584.1
ncRNA:24   CAC-GGUUACAAACUGACAGGCAGA   1
  |||-||||*||||||||||||||||
targets:1193   GUGUCCAACGUUUGACUGUCCGUCU   1217

1.0 Oryza sativa Japonica Group cDNA, clone: J065044J10, full insert sequence NA coding protein psRNATarget
AB051108.1
ncRNA:24   CAC-GGUUACAAACUGACAGGCAGA   1
  |||-||||*||||||||||||||||
targets:1188   GUGUCCAACGUUUGACUGUCCGUCU   1212

1.0 Oryza sativa RIP2 mRNA for ribosome inactivating protein 2, complete cds NA coding protein psRNATarget
XM_015788892.1
ncRNA:24   CACGGUUACAAACUGACAGGCAGA   1
  ***||||||||||||*||||||||
targets:3716   UACCCAAUGUUUGACCGUCCGUCU   3739

1.5 PREDICTED: Oryza sativa Japonica Group LRR receptor-like serine/threonine-protein kinase FLS2 (LOC4340067), mRNA LRR receptor-like serine/threonine-protein kinase FLS2(LOC4340067) coding protein psRNATarget
AK287701.1
ncRNA:24   CACGGUUACAAACUGACAGGCAGA   1
  ***||||||||||||*||||||||
targets:3587   UACCCAAUGUUUGACCGUCCGUCU   3610

1.5 Oryza sativa Japonica Group cDNA, clone: J065130L06, full insert sequence NA coding protein psRNATarget
AK289090.1
ncRNA:24   CACGGUUACAAACUGACAGGCAGA   1
  ***||||*||||||||||||||||
targets:853   UAUCCAACGUUUGACUGUCCGUCU   876

1.0 Oryza sativa Japonica Group cDNA, clone: J090095N19, full insert sequence NA coding protein psRNATarget
AK066541.1
ncRNA:24   CACG-GUUACAAACUGACAGGCAGA   1
  ||||-|||*|||||||*||||||||
targets:2913   GUGCUCAACGUUUGACCGUCCGUCU   2937

2.5 Oryza sativa Japonica Group cDNA clone:J013070E20, full insert sequence NA coding protein psRNATarget
XM_015775992.1
ncRNA:24   CACG-GUUACAAACUGACAGGCAGA   1
  ||||-|||*|||||||*||||||||
targets:2916   GUGCUCAACGUUUGACCGUCCGUCU   2940

2.5 PREDICTED: Oryza sativa Japonica Group CBL-interacting protein kinase 10 (LOC4332786), transcript variant X1, mRNA CBL-interacting protein kinase 10(LOC4332786) coding protein psRNATarget
XM_015775993.1
ncRNA:24   CACG-GUUACAAACUGACAGGCAGA   1
  ||||-|||*|||||||*||||||||
targets:1962   GUGCUCAACGUUUGACCGUCCGUCU   1986

2.5 PREDICTED: Oryza sativa Japonica Group CBL-interacting protein kinase 10 (LOC4332786), transcript variant X2, mRNA CBL-interacting protein kinase 10(LOC4332786) coding protein psRNATarget
CT828824.1
ncRNA:24   CACG-GUUACAAACUGACAGGCAGA   1
  ||||-|||*|||||||*||||||||
targets:1082   GUGCUCAACGUUUGACCGUCCGUCU   1106

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA109D05, full insert sequence NA coding protein psRNATarget
CT832631.1
ncRNA:24   CAC-GGUUACAAACUGACAGGCAGA   1
  |||-||||*|||||||*||||||||
targets:343   GUGUCCAACGUUUGACCGUCCGUCU   367

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA021A12, full insert sequence NA coding protein psRNATarget
CT832630.1
ncRNA:24   CAC-GGUUACAAACUGACAGGCAGA   1
  |||-||||*|||||||*||||||||
targets:343   GUGUCCAACGUUUGACCGUCCGUCU   367

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA020B12, full insert sequence NA coding protein psRNATarget
AK289036.1
ncRNA:24   CAC---GGUUACAAACUGACAGGCAGA   1
  *||---||||*|||||||*||||||||
targets:976   CUGAGCCCAACGUUUGACCGUCCGUCU   1002

2.5 Oryza sativa Japonica Group cDNA, clone: J090091J22, full insert sequence NA coding protein psRNATarget
XM_015790181.1
ncRNA:24   CACGGUUACAAACUGACAGGCAGA   1
  ******||||||||||||=|||||
targets:1582   UAAAACAUGUUUGACUGUUCGUCU   1605

2.5 PREDICTED: Oryza sativa Japonica Group flavin-containing monooxygenase FMO GS-OX-like 8 (LOC4342235), mRNA flavin-containing monooxygenase FMO GS-OX-like 8(LOC4342235) coding protein psRNATarget
AK110581.1
ncRNA:24   CACGGUUACAAACUGACAGGCAGA   1
  *|***|||*|||||||||=|||||
targets:492   UUAAAAAUAUUUGACUGUUCGUCU   515

2.5 Oryza sativa Japonica Group cDNA clone:002-168-E09, full insert sequence NA coding protein psRNATarget
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