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BaseInfo

ncRNA ID novel_osa_miR2838
Species Oryza sativa
Class miRNA
Genome position Chr10:9139810-9139862 [-]
Reference genome IRGSP-1.0
Source SRR2040381
Length 21
Mature sequence(if miRNA) 33 - GUCUUGGUCGGCGGCGCCGGC - 53
Stem-loop(if miRNA)   C           -    -   G U
GU UUGGUCGGCGG CGCC GGC G U
|| ||||||||||| |||| ||| | U
CG GACCAGCUGCU GUGG CUG U C
  C           U    A   G C
Stem-loop sequence GUCUUGGUCGGCGGCGCCGGCGGUUUCCUGGUCAGGUGUUCGUCGACCAGCGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_015763221.1
ncRNA:21   CGGCCGCGGCGGCUGGUUCUG   1
  ||||*|||||||||||||||=
targets:312   GCCGCCGCCGCCGACCAAGAU   332

2.0 PREDICTED: Oryza sativa Japonica Group 9-cis-epoxycarotenoid dioxygenase 1, chloroplastic (LOC9270250), mRNA 9-cis-epoxycarotenoid dioxygenase 1, chloroplastic(LOC9270250) coding protein psRNATarget
AY838901.1
ncRNA:21   CGGCCGCGGCGGCUGGUUCUG   1
  ||||*|||||||||||||||=
targets:278   GCCGCCGCCGCCGACCAAGAU   298

2.0 Oryza sativa (japonica cultivar-group) 9-cis-epoxycarotenoid dioxygenase 5 (NCED5) mRNA, complete cds NA coding protein psRNATarget
AK102030.1
ncRNA:21   CGGCCGCGGCGGCUGGUUCUG   1
  *||||||||||||*|||||||
targets:55   CCCGGCGCCGCCGCCCAAGAC   75

1.5 Oryza sativa Japonica Group cDNA clone:J033080P19, full insert sequence NA coding protein psRNATarget
XM_015765438.1
ncRNA:21   CGGCCGCGGCGGCUGGUUCUG   1
  |==|||||||||||*||||||
targets:380   GUUGGCGCCGCCGAACAAGAC   400

2.5 PREDICTED: Oryza sativa Japonica Group cationic peroxidase SPC4 (LOC4324556), mRNA cationic peroxidase SPC4(LOC4324556) coding protein psRNATarget
AK102172.1
ncRNA:21   CGGCCGCGGCGGCUGGUUCUG   1
  |==|||||||||||*||||||
targets:360   GUUGGCGCCGCCGAACAAGAC   380

2.5 Oryza sativa Japonica Group cDNA clone:J033086I12, full insert sequence NA coding protein psRNATarget
CT828436.1
ncRNA:21   CGGCCGCGGCGGCUGGUUCUG   1
  |==|||||||||||*||||||
targets:361   GUUGGCGCCGCCGAACAAGAC   381

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA107F10, full insert sequence NA coding protein psRNATarget
AK061131.1
ncRNA:21   CGGCCGCGGCGGCUGGUUCUG   1
  |==|||||||||||*||||||
targets:361   GUUGGCGCCGCCGAACAAGAC   381

2.5 Oryza sativa Japonica Group cDNA clone:006-208-A02, full insert sequence NA coding protein psRNATarget
AK104277.1
ncRNA:21   CGGCCGCGGCGGCUGGUUCUG   1
  |==|||||||||||*||||||
targets:320   GUUGGCGCCGCCGAACAAGAC   340

2.5 Oryza sativa Japonica Group cDNA clone:001-003-A06, full insert sequence NA coding protein psRNATarget
XM_015761845.1
ncRNA:21   CGGCCGCGGCGGCUGGUUCUG   1
  ||||*||||||||*|||||||
targets:506   GCCGCCGCCGCCGCCCAAGAC   526

2.5 PREDICTED: Oryza sativa Japonica Group ankyrin repeat protein SKIP35 (LOC4350194), mRNA ankyrin repeat protein SKIP35(LOC4350194) coding protein psRNATarget
AK103465.1
ncRNA:21   CGGCCGCGGCGGCUGGUUCUG   1
  ||||*||||||||||||||*|
targets:57   GCCGCCGCCGCCGACCAAGUC   77

2.5 Oryza sativa Japonica Group cDNA clone:J033129N11, full insert sequence NA coding protein psRNATarget
XM_015757041.1
ncRNA:21   CGGCCGCGGCGGCUGGUUCUG   1
  ||||*||||||||||*|||||
targets:1322   GCCGCCGCCGCCGACGAAGAC   1342

2.5 PREDICTED: Oryza sativa Japonica Group heat stress transcription factor B-2c (LOC4347637), transcript variant X2, mRNA heat stress transcription factor B-2c(LOC4347637) coding protein psRNATarget
XM_015764255.1
ncRNA:21   CGGCCGCGGCGGCUGGUUCUG   1
  ||||*||||||||||||||*|
targets:155   GCCGCCGCCGCCGACCAAGUC   175

2.5 PREDICTED: Oryza sativa Japonica Group pyruvate kinase, cytosolic isozyme (LOC4324263), mRNA pyruvate kinase, cytosolic isozyme(LOC4324263) coding protein psRNATarget
XM_015794665.1
ncRNA:21   CGGCCGCGGCGGCUGGUUCUG   1
  ||||*||||||||||*|||||
targets:965   GCCGCCGCCGCCGACGAAGAC   985

2.5 PREDICTED: Oryza sativa Japonica Group temperature-induced lipocalin-1 (LOC4345681), mRNA temperature-induced lipocalin-1(LOC4345681) coding protein psRNATarget
XM_015757040.1
ncRNA:21   CGGCCGCGGCGGCUGGUUCUG   1
  ||||*||||||||||*|||||
targets:1319   GCCGCCGCCGCCGACGAAGAC   1339

2.5 PREDICTED: Oryza sativa Japonica Group heat stress transcription factor B-2c (LOC4347637), transcript variant X1, mRNA heat stress transcription factor B-2c(LOC4347637) coding protein psRNATarget
AK103164.1
ncRNA:21   CGGCCGCGGCGGCUGGUUCUG   1
  ||||*||||||||||||||*|
targets:156   GCCGCCGCCGCCGACCAAGUC   176

2.5 Oryza sativa Japonica Group cDNA clone:J033121D22, full insert sequence NA coding protein psRNATarget
XM_015763896.1
ncRNA:21   CGGCCGCGGCGGCUGGUUCUG   1
  *|||||||||||||*|||||*
targets:1423   CCCGGCGCCGCCGAGCAAGAA   1443

2.5 PREDICTED: Oryza sativa Japonica Group ubiquitin-like protein 5 (LOC4351479), transcript variant X1, mRNA ubiquitin-like protein 5(LOC4351479) coding protein psRNATarget
XM_015780586.1
ncRNA:21   CGGCCGCGGCGGCUGGUUCUG   1
  ||||*||||||||*|||||||
targets:1438   GCCGCCGCCGCCGCCCAAGAC   1458

2.5 PREDICTED: Oryza sativa Japonica Group pollen-specific leucine-rich repeat extensin-like protein 4 (LOC4326290), mRNA pollen-specific leucine-rich repeat extensin-like protein 4(LOC4326290) coding protein psRNATarget
AK064742.1
ncRNA:21   CGGCCGCGGCGGCUGGUUCUG   1
  ||||*||||||||*|||||||
targets:1437   GCCGCCGCCGCCGCCCAAGAC   1457

2.5 Oryza sativa Japonica Group cDNA clone:002-120-D10, full insert sequence NA coding protein psRNATarget
AK106545.1
ncRNA:21   CGGCCGCGGCGGCUGGUUCUG   1
  ||||*||||||||||*|||||
targets:1122   GCCGCCGCCGCCGACGAAGAC   1142

2.5 Oryza sativa Japonica Group cDNA clone:002-108-F03, full insert sequence NA coding protein psRNATarget
XM_015773506.1
ncRNA:21   CGGCCGCGGCGGCUGGUUCUG   1
  ||||*||||||||||*|||||
targets:1232   GCCGCCGCCGCCGACGAAGAC   1252

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4334421 (LOC4334421), transcript variant X1, mRNA uncharacterized LOC4334421(LOC4334421) coding protein psRNATarget
XM_015790205.1
ncRNA:21   CGGCCGCGGCGGCUGGUUCUG   1
  ||||*||||||||*|||||||
targets:998   GCCGCCGCCGCCGCCCAAGAC   1018

2.5 PREDICTED: Oryza sativa Japonica Group heat stress transcription factor B-4b (LOC4344063), mRNA heat stress transcription factor B-4b(LOC4344063) coding protein psRNATarget
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