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BaseInfo

ncRNA ID	novel_osa_miR2835
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:32175107-32175337 [+]
Reference genome	IRGSP-1.0
Source	SRR2040381
Length	21
Mature sequence(if miRNA)	1 - UUAGAGGAUUAAAUAUGGACU - 21
Stem-loop(if miRNA)	---U    GG              ACUU CG     AAUUAUAUAAA   AA  UAAUUCGCGAGAUAAACUUUUUAAACCUAAUUAAUUUAUAAUUAGAGAAUGUUUACUGAGCAUCACAU     UAGA  AUUAAAUAUGGACU    A  AAACU           UGA  GC                                                                    A     ||||  ||||||||||||||    |  |||||           |||  ||                                                                    G     AUUU  UAAUUUAUAUCUGA    U  UUUGA           UAG  GU                                                                    A UAAU    -A              AAAU AU     ----------G   --  AUUAGAAUCUGUAUUAUAACUUGAUUAAGCGCUCUGCUUAAAUAACUCGGAUUAAUUAAGUAUUAAUC
Stem-loop sequence	UUAGAGGAUUAAAUAUGGACUACUUACGAAACUAAUUAUAUAAAUGAAAGCUAAUUCGCGAGAUAAACUUUUUAAACCUAAUUAAUUUAUAAUUAGAGAAUGUUUACUGAGCAUCACAUAGACUAAUUAUGAAUUAAUUAGGCUCAAUAAAUUCGUCUCGCGAAUUAGUUCAAUAUUAUGUCUAAGAUUAUGGAUGAGUUUUAUUAAAAGUCUAUAUUUAAUAUUUAUAAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK121287.1	ncRNA:21   UCAGGUAUAAAUUAGGAGAUU   1   ||||=|||||||||*|||||| targets:4601   AGUCUAUAUUUAAUACUCUAA   4621 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023108P15, full insert sequence	NA	coding protein	psRNATarget
AK120827.1	ncRNA:21   UCAGGUAUAAAUUAGGAGAUU   1   ||||=|||||||||*|||||| targets:4163   AGUCUAUAUUUAAUACUCUAA   4183 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023019E13, full insert sequence	NA	coding protein	psRNATarget
AK288720.1	ncRNA:21   UCAGGUAUAAAUUAGGAGAUU   1   ||||=|||||||||*|||||| targets:4040   AGUCUAUAUUUAAUACUCUAA   4060 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090062N14, full insert sequence	NA	coding protein	psRNATarget
XM_015779931.1	ncRNA:21   UCAGGUAUAAAUUAGGAGAUU   1   ||||=|||||||||*|||||| targets:16   AGUCUAUAUUUAAUGCUCUAA   36 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group probable disease resistance protein At4g14610 (LOC4336120), mRNA	probable disease resistance protein At4g14610(LOC4336120)	coding protein	psRNATarget
AK288793.1	ncRNA:21   UCAGGUAUAAAUUAGGAGAUU   1   ||||=|||||||||*|||||| targets:3272   AGUCUAUAUUUAAUACUCUAA   3292 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090070C08, full insert sequence	NA	coding protein	psRNATarget
CT834429.1	ncRNA:21   UCAGGUAUAAAUUAGGAGAUU   1   ||||=|||||||||*|||||| targets:1501   AGUCUAUAUUUAAUACUCUAA   1521 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA203L19, full insert sequence	NA	coding protein	psRNATarget
AK288638.1	ncRNA:21   UCAGGUAUAAAUUAGGAGAUU   1   ||||=|||||||||*|||||| targets:439   AGUCUAUAUUUAAUACUCUAA   459 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090055N09, full insert sequence	NA	coding protein	psRNATarget
AK288164.1	ncRNA:21   UCAGGUAUAAAUUAGGAGAUU   1   ||||=|||||||||*|||||| targets:1215   AGUCUAUAUUUAAUACUCUAA   1235 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090002E02, full insert sequence	NA	coding protein	psRNATarget
AK288202.1	ncRNA:21   UCAGGUAUAAAUUAGGAGAUU   1   ||||=|||||||||*|||||| targets:1215   AGUCUAUAUUUAAUACUCUAA   1235 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090008J03, full insert sequence	NA	coding protein	psRNATarget
CT831158.1	ncRNA:21   UCAGGUAUAAAUUAGGAGAUU   1   ||||=|||||||||*|||||| targets:777   AGUCUAUAUUUAAUACUCUAA   797 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA044E09, full insert sequence	NA	coding protein	psRNATarget
AK064594.1	ncRNA:21   UCAGGUAUAAAUUAGGAGAUU   1   ||||=|||||||||*|||||| targets:697   AGUCUAUAUUUAAUACUCUAA   717 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-112-G08, full insert sequence	NA	coding protein	psRNATarget
CT837623.1	ncRNA:21   UCAGGUAUAAAUUAGGAGAUU   1   ||||=|||||||||*|||||| targets:716   AGUCUAUAUUUAAUACUCUAA   736 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN019I07, full insert sequence	NA	coding protein	psRNATarget