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BaseInfo

ncRNA ID	novel_osa_miR2832
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:28068370-28068507 [+]
Reference genome	IRGSP-1.0
Source	SRR2040381
Length	22
Mature sequence(if miRNA)	1 - UUUUUUUAUUUUUUUCUCCCUU - 22
Stem-loop(if miRNA)	UUUUUUUA       C      CUUAUCUC         U   -    G -          -    UUUU  -  CAUU         UUUUUUU UCCCUU        UUUUUUUUC CCA CUUU C CUCCUUCCUC CCUC    GC UG    U         ||||||| ||||||        ||||||||| ||| |||| | |||||||||| ||||    || ||         AAAGAAA AGGGAA        AGAAAGAAG GGU GAAA G GAGGAAGGAG GGAG    CG AC    U -----UUA       A      --------         -   A    A A          U    ----  C  CUCU
Stem-loop sequence	UUUUUUUAUUUUUUUCUCCCUUCUUAUCUCUUUUUUUUCUCCACUUUGCCUCCUUCCUCCCUCUUUUGCUGCAUUUUUCUCCACGCGAGGUGAGGAAGGAGAGAAAAGAUGGGAAGAAAGAAAGGGAAAAAGAAAAUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288883.1	ncRNA:22   UUCCCUCUUUUUUUAUUUUUUU   1   |||*||||||||||||||=||| targets:3983   AAGAGAGAAAAAAAUAAAGAAA   4004 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090079H22, full insert sequence	NA	coding protein	psRNATarget
CT830748.1	ncRNA:22   UUCCCUCUUUUUUUAUUUUUUU   1   |||||=||||||||*||||||| targets:237   AAGGGGGAAAAAAAAAAAAAAA   258 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA107C10, full insert sequence	NA	coding protein	psRNATarget
AK067239.1	ncRNA:22   UUCCCUCUUUUUUUAUUUUUUU   1   ||||||*=|||||||||||||* targets:11   AAGGGACGAAAAAAUAAAAAAC   32 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J013096F21, full insert sequence	NA	coding protein	psRNATarget
AK058654.1	ncRNA:22   UUCCCUCUUUUUUUAUUUUUUU   1   *=||||||||||||*||||||| targets:73   CGGGGAGAAAAAAAAAAAAAAA   94 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:001-018-F05, full insert sequence	NA	coding protein	psRNATarget
DQ641917.1	ncRNA:22   UUCCCUCUUUUUUUAUUUUUUU   1   ||*|||||||||||*||||||| targets:948   AAAGGAGAAAAAAAAAAAAAAA   969 Target Full Sequence	1.5	Oryza sativa (japonica cultivar-group) myosin heavy chain 2 mRNA, partial cds	NA	coding protein	psRNATarget
CT837213.1	ncRNA:22   UUCCCUCUUUUUUUAUUUUUUU   1   |||*|||||||||*|||||||| targets:34   AAGAGAGAAAAAACUAAAAAAA   55 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI024D11, full insert sequence	NA	coding protein	psRNATarget
CT837213.1	ncRNA:22   UUCCCUCUUUUUUUAUUUUUUU   1   ||*|||*|||||||*||||||| targets:682   AAAGGAAAAAAAAAAAAAAAAA   703 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI024D11, full insert sequence	NA	coding protein	psRNATarget
CT836108.1	ncRNA:22   UUCCCUCUUUUUUUAUUUUUUU   1   ||||||*|||||||*||||||| targets:559   AAGGGAAAAAAAAAAAAAAAAA   580 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI032K07, full insert sequence	NA	coding protein	psRNATarget
BT130528.1	ncRNA:22   UUCCCUCUUUUUUUAUUUUUUU   1   ||*|||||||||||*||||||| targets:468   AAAGGAGAAAAAAAAAAAAAAA   489 Target Full Sequence	1.5	Oryza sativa clone RRlibD00714 mRNA sequence	NA	coding protein	psRNATarget
XM_015769648.1	ncRNA:22   UUCCCUCUUUUUUUAUUUUUUU   1   **||||||||||||||||*||| targets:729   CUGGGAGAAAAAAAUAAAUAAA   750 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group probable pinoresinol-lariciresinol reductase 3 (LOC4330458), mRNA	probable pinoresinol-lariciresinol reductase 3(LOC4330458)	coding protein	psRNATarget
AK068080.1	ncRNA:22   UUCCCUCUUUUUUUAUUUUUUU   1   **||||||||||||||||*||| targets:733   CUGGGAGAAAAAAAUAAAUAAA   754 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013132K15, full insert sequence	NA	coding protein	psRNATarget
AK106021.1	ncRNA:22   UUCCCUCUUUUUUUAUUUUUUU   1   **||||||||||||||||*||| targets:735   CUGGGAGAAAAAAAUAAAUAAA   756 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:001-206-C03, full insert sequence	NA	coding protein	psRNATarget
AK104529.1	ncRNA:22   UUCCCUCUUUUUUUAUUUUUUU   1   **||||||||||||||||*||| targets:727   CUGGGAGAAAAAAAUAAAUAAA   748 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:006-304-A04, full insert sequence	NA	coding protein	psRNATarget
XM_015780682.1	ncRNA:22   UUCCCUCUUUUUUUAUUUUUUU   1   |=||||*|||||||*||||||| targets:79   AGGGGAAAAAAAAAGAAAAAAA   100 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4335414 (LOC4335414), mRNA	uncharacterized LOC4335414(LOC4335414)	coding protein	psRNATarget
AF312920.1	ncRNA:22   UUCCCUCUUUUUUUAUUUUUUU   1   =|||||*|||||||*||||||| targets:2116   GAGGGAAAAAAAAAAAAAAAAA   2137 Target Full Sequence	2.5	Oryza sativa protein kinase-like protein mRNA, complete cds	NA	coding protein	psRNATarget