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BaseInfo

ncRNA ID	novel_osa_miR2829
Species	Oryza sativa
Class	miRNA
Genome position	Chr6:7981424-7981589 [-]
Reference genome	IRGSP-1.0
Source	SRR1555747;SRR2097778;SRR1555751;SRR4407953;SRR4407954;SRR4407955;SRR4407956;SRR4407962;SRR1298766;SRR1556018;SRR1556020;SRR1654491
Length	24
Mature sequence(if miRNA)	1 - AACGGUCAAACGUUGGACACGGAA - 24
Stem-loop(if miRNA)	--       -             CC       A     UUUUUU    AUUAGUAUUUUCAUUGUUGUUAGAUGAUAAAACAUG   CUGUGUC AACGUUUGACUGU  GUUUUAU UGAAA      UAUA                                    A   ||||||| |||||||||||||  ||||||| |||||      ||||   GGCACAG UUGCAAACUGGCA  CAGAAUA ACUUU      UACU                                    U AA       G             AA       A     -UUUAA    UUUUUUAAAUUUUCUAUUCAGUGCGUAUUUCAUAAU
Stem-loop sequence	CUGUGUCAACGUUUGACUGUCCGUUUUAUAUGAAAUUUUUUUAUAAUUAGUAUUUUCAUUGUUGUUAGAUGAUAAAACAUGAUUAAUACUUUAUGCGUGACUUAUCUUUUAAAUUUUUUUCAUAAUUUUUUCAAAUAAGACAAACGGUCAAACGUUGGACACGGAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
CT832631.1	ncRNA:24   AAGGCACAGGUUGCAAACUGGCAA   1   |||||||||||||||||||||||* targets:339   UUCCGUGUCCAACGUUUGACCGUC   362 Target Full Sequence	1.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA021A12, full insert sequence	NA	coding protein	psRNATarget
CT832630.1	ncRNA:24   AAGGCACAGGUUGCAAACUGGCAA   1   |||||||||||||||||||||||* targets:339   UUCCGUGUCCAACGUUUGACCGUC   362 Target Full Sequence	1.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA020B12, full insert sequence	NA	coding protein	psRNATarget
XM_015772621.1	ncRNA:24   AAGGCACAGGUUGCAAACUGGCAA   1   ||||||||||||||||||||=||* targets:403   UUCCGUGUCCAACGUUUGACUGUC   426 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4332894 (LOC4332894), mRNA	uncharacterized LOC4332894(LOC4332894)	coding protein	psRNATarget
CT828091.1	ncRNA:24   AAGGCACAGGUUGCAAACUGGCAA   1   |||||||||=|||||||||||||* targets:1570   UUCCGUGUCUAACGUUUGACCGUC   1593 Target Full Sequence	2.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA128N06, full insert sequence	NA	coding protein	psRNATarget
LQ235925.1	ncRNA:24   AAGGCACAGGUUGCAAACUGGCAA   1   ||=|||||=|||||||||||=||| targets:10   UUUCGUGUUCAACGUUUGACUGUU   33 Target Full Sequence	2.5	Sequence 1920 from Patent EP2985353	NA	coding protein	psRNATarget
JB164256.1	ncRNA:24   AAGGCACAGGUUGCAAACUGGCAA   1   ||=|||||=|||||||||||=||| targets:10   UUUCGUGUUCAACGUUUGACUGUU   33 Target Full Sequence	2.5	Sequence 1920 from Patent EP2559767	NA	coding protein	psRNATarget
HI403795.1	ncRNA:24   AAGGCACAGGUUGCAAACUGGCAA   1   ||=|||||=|||||||||||=||| targets:10   UUUCGUGUUCAACGUUUGACUGUU   33 Target Full Sequence	2.5	Sequence 1920 from Patent EP2074227	NA	coding protein	psRNATarget
AK064197.1	ncRNA:24   AAGGCACAGGUUGCAAACUGGCAA   1   *|=||||||=|||||||||||||| targets:890   AUUCGUGUCUAACGUUUGACCGUU   913 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:002-104-D06, full insert sequence	NA	coding protein	psRNATarget
AK120736.1	ncRNA:24   AAGGCACAGGUUGCAAACUGGCAA   1   *|||||||=||||||||||||||* targets:2673   AUCCGUGUUCAACGUUUGACCGUC   2696 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J023003H05, full insert sequence	NA	coding protein	psRNATarget
AK109598.1	ncRNA:24   AAGGCACAGGUUGCAAACUGGCAA   1   **||||||||=||||||||||||| targets:1654   AACCGUGUCCGACGUUUGACCGUU   1677 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:002-137-D09, full insert sequence	NA	coding protein	psRNATarget
XM_015771325.1	ncRNA:24   AAGGCACAGGUUGCAAACUGGCAA   1   *|||||||||||||||||||=||* targets:1212   CUCCGUGUCCAACGUUUGACUGUC   1235 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group protein synthesis inhibitor I (LOC4324068), mRNA	protein synthesis inhibitor I(LOC4324068)	coding protein	psRNATarget
AK287584.1	ncRNA:24   AAGGCACAGGUUGCAAACUGGCAA   1   *|||||||||||||||||||=||* targets:1189   CUCCGUGUCCAACGUUUGACUGUC   1212 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065044J10, full insert sequence	NA	coding protein	psRNATarget
AB051108.1	ncRNA:24   AAGGCACAGGUUGCAAACUGGCAA   1   *|||||||||||||||||||=||* targets:1184   CUCCGUGUCCAACGUUUGACUGUC   1207 Target Full Sequence	2.5	Oryza sativa RIP2 mRNA for ribosome inactivating protein 2, complete cds	NA	coding protein	psRNATarget
AK288529.1	ncRNA:24   AAGGCACAGGUUGCAAACUGGCAA   1   |||||||||||||||||||||*|* targets:71   UUCCGUGUCCAACGUUUGACCAUC   94 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090044M17, full insert sequence	NA	coding protein	psRNATarget
XM_015792475.1	ncRNA:24   AAGGCACAGGUUGCAAACUGGCAA   1   |||||||||||||||||||||*|* targets:2605   UUCCGUGUCCAACGUUUGACCAUC   2628 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group hydrophobic protein LTI6A (LOC4344028), transcript variant X4, mRNA	hydrophobic protein LTI6A(LOC4344028)	coding protein	psRNATarget
XM_015792473.1	ncRNA:24   AAGGCACAGGUUGCAAACUGGCAA   1   |||||||||||||||||||||*|* targets:2591   UUCCGUGUCCAACGUUUGACCAUC   2614 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group hydrophobic protein LTI6A (LOC4344028), transcript variant X2, mRNA	hydrophobic protein LTI6A(LOC4344028)	coding protein	psRNATarget
AK070212.1	ncRNA:24   AAGGCACAGGUUGCAAACUGGCAA   1   ||||*||||||||||||||||||* targets:1280   UUCCAUGUCCAACGUUUGACCGUC   1303 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J023044F01, full insert sequence	NA	coding protein	psRNATarget
AK106724.1	ncRNA:24   AAGGCACAGGUUGCAAACUGGCAA   1   |||||||||||||*|||||||||* targets:666   UUCCGUGUCCAACAUUUGACCGUC   689 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-114-G11, full insert sequence	NA	coding protein	psRNATarget
CT827991.1	ncRNA:24   AAGGCACAGGUUGCAAACUGGCAA   1   |||||||||||||*|||||||||* targets:653   UUCCGUGUCCAACAUUUGACCGUC   676 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA128H03, full insert sequence	NA	coding protein	psRNATarget
AK242553.1	ncRNA:24   AAGGCACAGGUUGCAAACUGGCAA   1   |||||||*|||||||||||||||* targets:179   UUCCGUGCCCAACGUUUGACCGUC   202 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J080319L22, full insert sequence	NA	coding protein	psRNATarget
LQ236018.1	ncRNA:24   AAGGCACAGGUUGCAAACUGGCAA   1   ||=|||||==|||||||||||||* targets:12   UUUCGUGUUUAACGUUUGACCGUC   35 Target Full Sequence	3.0	Sequence 2013 from Patent EP2985353	NA	coding protein	psRNATarget
JB164349.1	ncRNA:24   AAGGCACAGGUUGCAAACUGGCAA   1   ||=|||||==|||||||||||||* targets:12   UUUCGUGUUUAACGUUUGACCGUC   35 Target Full Sequence	3.0	Sequence 2013 from Patent EP2559767	NA	coding protein	psRNATarget
HI403888.1	ncRNA:24   AAGGCACAGGUUGCAAACUGGCAA   1   ||=|||||==|||||||||||||* targets:12   UUUCGUGUUUAACGUUUGACCGUC   35 Target Full Sequence	3.0	Sequence 2013 from Patent EP2074227	NA	coding protein	psRNATarget
XM_015776704.1	ncRNA:24   AA-GGCACAGGUUGCAAACUGGCAA   1   ||-|||||||=|||||||||||||* targets:1596   UUGCCGUGUCUAACGUUUGACCGUC   1620 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group glucan endo-1,3-beta-glucosidase 7 (LOC4332132), transcript variant X1, mRNA	glucan endo-1,3-beta-glucosidase 7(LOC4332132)	coding protein	psRNATarget
XM_015776705.1	ncRNA:24   AA-GGCACAGGUUGCAAACUGGCAA   1   ||-|||||||=|||||||||||||* targets:1590   UUGCCGUGUCUAACGUUUGACCGUC   1614 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group glucan endo-1,3-beta-glucosidase 7 (LOC4332132), transcript variant X2, mRNA	glucan endo-1,3-beta-glucosidase 7(LOC4332132)	coding protein	psRNATarget
XM_015776706.1	ncRNA:24   AA-GGCACAGGUUGCAAACUGGCAA   1   ||-|||||||=|||||||||||||* targets:1584   UUGCCGUGUCUAACGUUUGACCGUC   1608 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group glucan endo-1,3-beta-glucosidase 7 (LOC4332132), transcript variant X3, mRNA	glucan endo-1,3-beta-glucosidase 7(LOC4332132)	coding protein	psRNATarget
AK242028.1	ncRNA:24   AA-GGCACAGGUUGCAAACUGGCAA   1   ||-|||||||=|||||||||||||* targets:1473   UUGCCGUGUCUAACGUUUGACCGUC   1497 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J075115C11, full insert sequence	NA	coding protein	psRNATarget
XM_015768707.1	ncRNA:24   AAGGCACAGGUUGCAAACUGGCAA   1   *|=|*||||||||||||||||||| targets:1228   GUUCAUGUCCAACGUUUGACCGUU   1251 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group cysteine-rich repeat secretory protein 15-like (LOC107279942), transcript variant X3, mRNA	cysteine-rich repeat secretory protein 15-like(LOC107279942)	coding protein	psRNATarget
XM_015768705.1	ncRNA:24   AAGGCACAGGUUGCAAACUGGCAA   1   *|=|*||||||||||||||||||| targets:1228   GUUCAUGUCCAACGUUUGACCGUU   1251 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group cysteine-rich repeat secretory protein 15-like (LOC107279942), transcript variant X1, mRNA	cysteine-rich repeat secretory protein 15-like(LOC107279942)	coding protein	psRNATarget
XM_015768708.1	ncRNA:24   AAGGCACAGGUUGCAAACUGGCAA   1   *|=|*||||||||||||||||||| targets:1228   GUUCAUGUCCAACGUUUGACCGUU   1251 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group cysteine-rich repeat secretory protein 15-like (LOC107279942), transcript variant X4, mRNA	cysteine-rich repeat secretory protein 15-like(LOC107279942)	coding protein	psRNATarget
XM_015768706.1	ncRNA:24   AAGGCACAGGUUGCAAACUGGCAA   1   *|=|*||||||||||||||||||| targets:1228   GUUCAUGUCCAACGUUUGACCGUU   1251 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group cysteine-rich repeat secretory protein 15-like (LOC107279942), transcript variant X2, mRNA	cysteine-rich repeat secretory protein 15-like(LOC107279942)	coding protein	psRNATarget
AK108063.1	ncRNA:24   AAGGCACAGGUUGCAAACUGGCAA   1   ||=||||*|||||||||||||||* targets:1346   UUUCGUGCCCAACGUUUGACCGUC   1369 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:002-138-B04, full insert sequence	NA	coding protein	psRNATarget
AK120358.1	ncRNA:24   AAGGCACAGGUUGCAAACUGGCAA   1   *||||||||||||*|||||||||* targets:1062   AUCCGUGUCCAACAUUUGACCGUC   1085 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013067F13, full insert sequence	NA	coding protein	psRNATarget
XM_015770137.1	ncRNA:24   AAGGCACAGGUUGCAAACUGGCAA   1   *||||||*|||||||||||||||* targets:3141   AUCCGUGCCCAACGUUUGACCGUC   3164 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase At4g36180 (LOC9268112), mRNA	probable LRR receptor-like serine/threonine-protein kinase At4g36180(LOC9268112)	coding protein	psRNATarget
AK288458.1	ncRNA:24   AAGGCACAGGUUGCAAACUGGCAA   1   |||=*|*||||||||||||=|||| targets:1159   UUCUAUAUCCAACGUUUGAUCGUU   1182 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090035E13, full insert sequence	NA	coding protein	psRNATarget
AK103228.1	ncRNA:24   AAGGCACAGGUUGCAAACUGGCAA   1   ||==*||||||||||||||||*|| targets:2643   UUUUUUGUCCAACGUUUGACCAUU   2666 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J033123C21, full insert sequence	NA	coding protein	psRNATarget
XM_015779567.1	ncRNA:24   AAGGCACAGGUUGCAAACUGGCAA   1   *|=|*||||||||*|||||||||| targets:1940   GUUCAUGUCCAACAUUUGACCGUU   1963 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group beta-fructofuranosidase, insoluble isoenzyme 3 (LOC4335789), mRNA	beta-fructofuranosidase, insoluble isoenzyme 3(LOC4335789)	coding protein	psRNATarget
AK120779.1	ncRNA:24   AAGGCACAGGUUGCAAACUGGCAA   1   *|=|*||||||||*|||||||||| targets:1947   GUUCAUGUCCAACAUUUGACCGUU   1970 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023009M11, full insert sequence	NA	coding protein	psRNATarget
CT829159.1	ncRNA:24   AAGGCACAGGUUGCAAACUGGCAA   1   ||==-||||||||||||||||*|| targets:883   UUUU-UGUCCAACGUUUGACCAUU   905 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN009P22, full insert sequence	NA	coding protein	psRNATarget
AK066541.1	ncRNA:24   AAGGCACAGGUUGCAAACUGGCAA   1   *|==|||*=||||||||||||||* targets:2909   AUUUGUGCUCAACGUUUGACCGUC   2932 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J013070E20, full insert sequence	NA	coding protein	psRNATarget
XM_015775992.1	ncRNA:24   AAGGCACAGGUUGCAAACUGGCAA   1   *|==|||*=||||||||||||||* targets:2912   AUUUGUGCUCAACGUUUGACCGUC   2935 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group CBL-interacting protein kinase 10 (LOC4332786), transcript variant X1, mRNA	CBL-interacting protein kinase 10(LOC4332786)	coding protein	psRNATarget
XM_015775993.1	ncRNA:24   AAGGCACAGGUUGCAAACUGGCAA   1   *|==|||*=||||||||||||||* targets:1958   AUUUGUGCUCAACGUUUGACCGUC   1981 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group CBL-interacting protein kinase 10 (LOC4332786), transcript variant X2, mRNA	CBL-interacting protein kinase 10(LOC4332786)	coding protein	psRNATarget
CT828824.1	ncRNA:24   AAGGCACAGGUUGCAAACUGGCAA   1   *|==|||*=||||||||||||||* targets:1078   AUUUGUGCUCAACGUUUGACCGUC   1101 Target Full Sequence	3.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA109D05, full insert sequence	NA	coding protein	psRNATarget
AK289036.1	ncRNA:24   AAGGCACAGGUUGCAAACUGGCAA   1   *||=|*|*|||||||||||||||* targets:974   AUCUGAGCCCAACGUUUGACCGUC   997 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090091J22, full insert sequence	NA	coding protein	psRNATarget
AK064236.1	ncRNA:24   AAGGCACAGGUUGCAAACUGGCAA   1   ||*|*|||*||||||||||||||* targets:1505   UUGCAUGUGCAACGUUUGACCGUC   1528 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:002-104-H12, full insert sequence	NA	coding protein	psRNATarget
AK108746.1	ncRNA:24   AAGGCACAGGUUGCAAACUGGCAA   1   *|=|*|*||||||||||*|||||| targets:1298   AUUCAUAUCCAACGUUUCACCGUU   1321 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-150-E12, full insert sequence	NA	coding protein	psRNATarget
XM_015781389.1	ncRNA:24   AAGGCACAGGUUGCAAACUGGCAA   1   ||==-|*||||||||||||||*|| targets:1297   UUUU-UAUCCAACGUUUGACCAUU   1319 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4336685 (LOC4336685), transcript variant X1, mRNA	uncharacterized LOC4336685(LOC4336685)	coding protein	psRNATarget
XM_015781390.1	ncRNA:24   AAGGCACAGGUUGCAAACUGGCAA   1   ||==-|*||||||||||||||*|| targets:1297   UUUU-UAUCCAACGUUUGACCAUU   1319 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4336685 (LOC4336685), transcript variant X2, mRNA	uncharacterized LOC4336685(LOC4336685)	coding protein	psRNATarget
XM_015779878.1	ncRNA:24   AAGGCACAGGUUGCAAACUGGCAA   1   ||==-||*|||||||||||||*|| targets:194   UUUU-UGACCAACGUUUGACCAUU   216 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group AT-hook motif nuclear-localized protein 9 (LOC4337449), mRNA	AT-hook motif nuclear-localized protein 9(LOC4337449)	coding protein	psRNATarget