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BaseInfo

ncRNA ID novel_osa_miR2820
Species Oryza sativa
Class miRNA
Genome position Chr4:17918527-17918636 [+]
Reference genome IRGSP-1.0
Source SRR2040381
Length 21
Mature sequence(if miRNA) 1 - UUUUUCCAUCACAUCGUUCCA - 21
Stem-loop(if miRNA) --       A          C      C  C       C         C   AAC
  UUUUUCC UCACAUCGUU CAAUUU AA CAAACUU CAAUUUUGG GUG   U
  ||||||| |||||||||| |||||| || ||||||| ||||||||| |||   A
  GAAAAGG AGUGUAGCAA GUUAAA UU GUUUGAA GUUAAAACC CAC   A
UU       C          A      A  A       A         -   ACA
Stem-loop sequence UUUUUCCAUCACAUCGUUCCAAUUUCAACCAAACUUCCAAUUUUGGCGUGAACUAAACACACCCAAAAUUGAAAGUUUGAUUAAAAUUGAAACGAUGUGACGGAAAAGUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT129013.1
ncRNA:21   ACCUUGCUACACUACCUUUUU   1
  ||||||||||||||||||||=
targets:194   UGGAACGAUGUGAUGGAAAAG   214

1.0 Oryza sativa clone RRlibA00390 mRNA sequence NA coding protein psRNATarget
XM_015758125.1
ncRNA:21   ACCUUGCUACACUACCUUUUU   1
  ||||||||||||||||||||=
targets:1005   UGGAACGAUGUGAUGGAAAAG   1025

1.0 PREDICTED: Oryza sativa Japonica Group GDSL esterase/lipase At5g45920-like (LOC107279074), mRNA GDSL esterase/lipase At5g45920-like(LOC107279074) coding protein psRNATarget
AK064418.1
ncRNA:21   ACCUUGCUACACUACCUUUUU   1
  ||||||||||||||||||||=
targets:833   UGGAACGAUGUGAUGGAAAAG   853

1.0 Oryza sativa Japonica Group cDNA clone:002-110-B04, full insert sequence NA coding protein psRNATarget
AK099726.1
ncRNA:21   ACCUUGCUACACUACCUUUUU   1
  ||||||||||||||||||||=
targets:1866   UGGAACGAUGUGAUGGAAAAG   1886

1.0 Oryza sativa Japonica Group cDNA clone:J013089E05, full insert sequence NA coding protein psRNATarget
AK287789.1
ncRNA:21   ACCUUGCUACACUACCUUUUU   1
  ||||||||||||||||||||=
targets:2732   UGGAACGAUGUGAUGGAAAAG   2752

1.0 Oryza sativa Japonica Group cDNA, clone: J065172O08, full insert sequence NA coding protein psRNATarget
XM_015771650.1
ncRNA:21   ACCUUGCUACACUACCUUUUU   1
  ||||||||||||||||||||=
targets:2847   UGGAACGAUGUGAUGGAAAAG   2867

1.0 PREDICTED: Oryza sativa Japonica Group TBCC domain-containing protein 1 (LOC4328604), mRNA TBCC domain-containing protein 1(LOC4328604) coding protein psRNATarget
AK288954.1
ncRNA:21   ACCUUGCUACACUACCUUUUU   1
  ||||||||||||||||||||=
targets:4439   UGGAACGAUGUGAUGGAAAAG   4459

1.0 Oryza sativa Japonica Group cDNA, clone: J090083O05, full insert sequence NA coding protein psRNATarget
XM_015760072.1
ncRNA:21   ACCUUGCUACACUACCUUUUU   1
  |||||=||||||||||||||=
targets:1652   UGGAAUGAUGUGAUGGAAAAG   1672

2.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4325376 (LOC4325376), mRNA uncharacterized LOC4325376(LOC4325376) coding protein psRNATarget
XM_015767911.1
ncRNA:21   ACCUUGCUACACUACCUUUUU   1
  |||||||=||||||||||||=
targets:2541   UGGAACGGUGUGAUGGAAAAG   2561

2.0 PREDICTED: Oryza sativa Japonica Group calcium-binding mitochondrial carrier protein SCaMC-3 (LOC4328650), transcript variant X2, mRNA calcium-binding mitochondrial carrier protein SCaMC-3(LOC4328650) coding protein psRNATarget
XM_015784901.1
ncRNA:21   ACCUUGCUACACUACCUUUUU   1
  |||||=||||||||||||||=
targets:1539   UGGAAUGAUGUGAUGGAAAAG   1559

2.0 PREDICTED: Oryza sativa Japonica Group E3 ubiquitin-protein ligase SINAT3 (LOC4338181), transcript variant X3, mRNA E3 ubiquitin-protein ligase SINAT3(LOC4338181) coding protein psRNATarget
XM_015775505.1
ncRNA:21   ACCUUGCUACACUACCUUUUU   1
  ||||=|||||||||||||||=
targets:2501   UGGAGCGAUGUGAUGGAAAAG   2521

2.0 PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At5g01110 (LOC4331727), transcript variant X1, mRNA pentatricopeptide repeat-containing protein At5g01110(LOC4331727) coding protein psRNATarget
XM_015775506.1
ncRNA:21   ACCUUGCUACACUACCUUUUU   1
  ||||=|||||||||||||||=
targets:2501   UGGAGCGAUGUGAUGGAAAAG   2521

2.0 PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At5g01110 (LOC4331727), transcript variant X2, mRNA pentatricopeptide repeat-containing protein At5g01110(LOC4331727) coding protein psRNATarget
XM_015762638.1
ncRNA:21   ACCUUGCUACACUACCUUUUU   1
  ||*||||||||||||||||||
targets:1752   UGAAACGAUGUGAUGGAAAAA   1772

1.0 PREDICTED: Oryza sativa Japonica Group probable tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial (LOC9270395), transcript variant X1, mRNA probable tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial(LOC9270395) coding protein psRNATarget
BT132151.1
ncRNA:21   ACCUUGCUACACUACCUUUUU   1
  |||||||||||||*||||||=
targets:290   UGGAACGAUGUGACGGAAAAG   310

2.5 Oryza sativa clone RRlibB00324 mRNA sequence NA coding protein psRNATarget
XM_015755806.1
ncRNA:21   ACCUUGCUACACUACCUUUUU   1
  |*||||||||||||||||||=
targets:629   UAGAACGAUGUGAUGGAAAAG   649

1.0 PREDICTED: Oryza sativa Japonica Group cinnamoyl-CoA reductase 1-like (LOC107278880), mRNA cinnamoyl-CoA reductase 1-like(LOC107278880) coding protein psRNATarget
XM_015757809.1
ncRNA:21   ACCUUGCUACACUACCUUUUU   1
  |||||||||||||*||||||=
targets:823   UGGAACGAUGUGACGGAAAAG   843

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107277943 (LOC107277943), transcript variant X2, mRNA uncharacterized LOC107277943(LOC107277943) coding protein psRNATarget
XM_015757808.1
ncRNA:21   ACCUUGCUACACUACCUUUUU   1
  |||||||||||||*||||||=
targets:964   UGGAACGAUGUGACGGAAAAG   984

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107277943 (LOC107277943), transcript variant X1, mRNA uncharacterized LOC107277943(LOC107277943) coding protein psRNATarget
AK287731.1
ncRNA:21   ACCUUGCUACACUACCUUUUU   1
  ||||||*|||||||||||||=
targets:686   UGGAACUAUGUGAUGGAAAAG   706

2.0 Oryza sativa Japonica Group cDNA, clone: J065141A08, full insert sequence NA coding protein psRNATarget
XM_015781950.1
ncRNA:21   ACCUUGCUACACUACCUUUUU   1
  |||||||||||||*||||||=
targets:1754   UGGAACGAUGUGACGGAAAAG   1774

2.5 PREDICTED: Oryza sativa Japonica Group probable tRNA N6-adenosine threonylcarbamoyltransferase (LOC4338033), mRNA probable tRNA N6-adenosine threonylcarbamoyltransferase(LOC4338033) coding protein psRNATarget
XM_015758972.1
ncRNA:21   ACCUUGCUACACUACCUUUUU   1
  |*||||||||||||||||||=
targets:2093   UAGAACGAUGUGAUGGAAAAG   2113

1.0 PREDICTED: Oryza sativa Japonica Group NAD-dependent malic enzyme 59 kDa isoform, mitochondrial (LOC4349051), transcript variant X2, mRNA NAD-dependent malic enzyme 59 kDa isoform, mitochondrial(LOC4349051) coding protein psRNATarget
XM_015773695.1
ncRNA:21   ACCUUGCUACACUACCUUUUU   1
  |||||||||||||*||||||=
targets:71   UGGAACGAUGUGACGGAAAAG   91

2.5 PREDICTED: Oryza sativa Japonica Group putative ubiquitin-like-specific protease 1B (LOC9268223), transcript variant X3, mRNA putative ubiquitin-like-specific protease 1B(LOC9268223) coding protein psRNATarget
XM_015793178.1
ncRNA:21   ACCUUGCUACACUACCUUUUU   1
  |*||||||||||||||||||=
targets:2222   UAGAACGAUGUGAUGGAAAAG   2242

1.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107281842 (LOC107281842), transcript variant X2, mRNA uncharacterized LOC107281842(LOC107281842) coding protein psRNATarget
XM_015773694.1
ncRNA:21   ACCUUGCUACACUACCUUUUU   1
  |||||||||||||*||||||=
targets:1022   UGGAACGAUGUGACGGAAAAG   1042

2.5 PREDICTED: Oryza sativa Japonica Group putative ubiquitin-like-specific protease 1B (LOC9268223), transcript variant X2, mRNA putative ubiquitin-like-specific protease 1B(LOC9268223) coding protein psRNATarget
AK072626.1
ncRNA:21   ACCUUGCUACACUACCUUUUU   1
  |*||||||||||||||||||=
targets:656   UAGAACGAUGUGAUGGAAAAG   676

1.0 Oryza sativa Japonica Group cDNA clone:J023131O08, full insert sequence NA coding protein psRNATarget
XM_015785284.1
ncRNA:21   ACCUUGCUACACUACCUUUUU   1
  |*||||||||||||||||||=
targets:655   UAGAACGAUGUGAUGGAAAAG   675

1.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4339555 (LOC4339555), mRNA uncharacterized LOC4339555(LOC4339555) coding protein psRNATarget
AK066765.1
ncRNA:21   ACCUUGCUACACUACCUUUUU   1
  ||*|||||||||||||||||=
targets:3151   UGAAACGAUGUGAUGGAAAAG   3171

2.0 Oryza sativa Japonica Group cDNA clone:J013082G02, full insert sequence NA coding protein psRNATarget
XM_015762148.1
ncRNA:21   ACCUUGCUACACUACCUUUUU   1
  |||||||||||||*||||||=
targets:161   UGGAACGAUGUGACGGAAAAG   181

2.5 PREDICTED: Oryza sativa Japonica Group disease resistance protein RPM1 (LOC4350133), transcript variant X1, mRNA disease resistance protein RPM1(LOC4350133) coding protein psRNATarget
AK099802.1
ncRNA:21   ACCUUGCUACACUACCUUUUU   1
  |||||||||||||*||||||=
targets:1028   UGGAACGAUGUGACGGAAAAG   1048

2.5 Oryza sativa Japonica Group cDNA clone:J013098A22, full insert sequence NA coding protein psRNATarget
AK072138.1
ncRNA:21   ACCUUGCUACACUACCUUUUU   1
  |||||=|||||||*|||||||
targets:1140   UGGAAUGAUGUGACGGAAAAA   1160

2.5 Oryza sativa Japonica Group cDNA clone:J013123A15, full insert sequence NA coding protein psRNATarget
XM_015769012.1
ncRNA:21   ACCUUGCUACACUACCUUUUU   1
  |||||||||||||*||||||=
targets:3319   UGGAACGAUGUGACGGAAAAG   3339

2.5 PREDICTED: Oryza sativa Japonica Group disease resistance protein RGA2-like (LOC107277690), transcript variant X1, mRNA disease resistance protein RGA2-like(LOC107277690) coding protein psRNATarget
AK288868.1
ncRNA:21   ACCUUGCUACACUACCUUUUU   1
  |||||||||||||*||||||=
targets:5738   UGGAACGAUGUGACGGAAAAG   5758

2.5 Oryza sativa Japonica Group cDNA, clone: J090078E01, full insert sequence NA coding protein psRNATarget
XM_015762999.1
ncRNA:21   ACCUUGCUACACUACCUUUUU   1
  |||||||||||||*||||||=
targets:3473   UGGAACGAUGUGACGGAAAAG   3493

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4327079 (LOC4327079), transcript variant X2, mRNA uncharacterized LOC4327079(LOC4327079) coding protein psRNATarget
AK289090.1
ncRNA:21   ACCUUGCUACACUACCUUUUU   1
  ||*||=||||||||||||||=
targets:1243   UGAAAUGAUGUGAUGGAAAAG   1263

3.0 Oryza sativa Japonica Group cDNA, clone: J090095N19, full insert sequence NA coding protein psRNATarget
AK109742.1
ncRNA:21   ACCUUGCUACACUACCUUUUU   1
  |*||||||||||||*||||||
targets:1764   UAGAACGAUGUGAUAGAAAAA   1784

1.5 Oryza sativa Japonica Group cDNA clone:002-146-E05, full insert sequence NA coding protein psRNATarget
AK106655.1
ncRNA:21   ACCUUGCUACACUACCUUUUU   1
  |*|||||||||||*||||||=
targets:467   UAGAACGAUGUGACGGAAAAG   487

2.5 Oryza sativa Japonica Group cDNA clone:002-113-G04, full insert sequence NA coding protein psRNATarget
AK109584.1
ncRNA:21   ACCUUGCUACACUACCUUUUU   1
  |*|||||||||||*||||||=
targets:433   UAGAACGAUGUGACGGAAAAG   453

2.5 Oryza sativa Japonica Group cDNA clone:002-137-A10, full insert sequence NA coding protein psRNATarget
AK288852.1
ncRNA:21   ACCUUGCUACACUACCUUUUU   1
  |*|||||||*||||||||||=
targets:1695   UAGAACGAUAUGAUGGAAAAG   1715

2.5 Oryza sativa Japonica Group cDNA, clone: J090075M07, full insert sequence NA coding protein psRNATarget
AK068259.1
ncRNA:21   ACCUUGCUACACUACCUUUUU   1
  **||*=|||||||||||||||
targets:983   CAGAUUGAUGUGAUGGAAAAA   1003

2.0 Oryza sativa Japonica Group cDNA clone:J013149O16, full insert sequence NA coding protein psRNATarget
XM_015759733.1
ncRNA:21   ACCUUGCUACACUACCUUUUU   1
  |*|=*=|||||||||||||||
targets:2464   UAGGUUGAUGUGAUGGAAAAA   2484

3.0 PREDICTED: Oryza sativa Japonica Group mannose/glucose-specific lectin (LOC4350895), transcript variant X4, mRNA mannose/glucose-specific lectin(LOC4350895) coding protein psRNATarget
XM_015759731.1
ncRNA:21   ACCUUGCUACACUACCUUUUU   1
  |*|=*=|||||||||||||||
targets:2508   UAGGUUGAUGUGAUGGAAAAA   2528

3.0 PREDICTED: Oryza sativa Japonica Group mannose/glucose-specific lectin (LOC4350895), transcript variant X2, mRNA mannose/glucose-specific lectin(LOC4350895) coding protein psRNATarget
XM_015759732.1
ncRNA:21   ACCUUGCUACACUACCUUUUU   1
  |*|=*=|||||||||||||||
targets:2546   UAGGUUGAUGUGAUGGAAAAA   2566

3.0 PREDICTED: Oryza sativa Japonica Group mannose/glucose-specific lectin (LOC4350895), transcript variant X3, mRNA mannose/glucose-specific lectin(LOC4350895) coding protein psRNATarget
XM_015759729.1
ncRNA:21   ACCUUGCUACACUACCUUUUU   1
  |*|=*=|||||||||||||||
targets:2556   UAGGUUGAUGUGAUGGAAAAA   2576

3.0 PREDICTED: Oryza sativa Japonica Group mannose/glucose-specific lectin (LOC4350895), transcript variant X1, mRNA mannose/glucose-specific lectin(LOC4350895) coding protein psRNATarget
AK241609.1
ncRNA:21   ACCUUGCUACACUACCUUUUU   1
  |*|=*=|||||||||||||||
targets:2606   UAGGUUGAUGUGAUGGAAAAA   2626

3.0 Oryza sativa Japonica Group cDNA, clone: J065185L18, full insert sequence NA coding protein psRNATarget
CT835695.1
ncRNA:21   ACCUUGCUACACUACCUUUUU   1
  **|=*=|||||||||||||||
targets:220   AAGGUUGAUGUGAUGGAAAAA   240

3.0 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN031B11, full insert sequence NA coding protein psRNATarget
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