ncRNA ID | novel_osa_miR2819 |
Species | Oryza sativa |
Class | miRNA |
Genome position | Chr4:3659477-3659642 [-] |
Reference genome | IRGSP-1.0 |
Source | SRR2040381 |
Length | 24 |
Mature sequence(if miRNA) | 1 - AUGGUCAAAACGCUAAACACGGAU - 24 |
Stem-loop(if miRNA) |
-- UA   C  A     -                      AAA      -UU      UUUAUUGUUAUUACAUGAUAAAACAU   U  UGU UA CGUUU GACCGUUCGUCUUAUUUGAAAA   UUAUGA   AGUAUU                          G   |  ||| || ||||| ||||||||||||||||||||||   ||||||   ||||||                          G   G  ACA AU GCAAA CUGGUAAGCAGAAUAAACUUUU   AAUACU   UUAAUU                          G UA GC   A  C     A                      -AA      UUU      UUUUUAAUUAGUGUGUAUUUCAUGAU |
Stem-loop sequence | UUAUGUCUAACGUUUGACCGUUCGUCUUAUUUGAAAAAAAUUAUGAUUAGUAUUUUUAUUGUUAUUACAUGAUAAAACAUGGGUAGUACUUUAUGUGUGAUUAAUUUUUUUAAUUUUUUCAUAAAAUUUUCAAAUAAGACGAAUGGUCAAAACGCUAAACACGGAU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_015774629.1 |
|
1.5 | PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107280382 (LOC107280382), transcript variant X1, mRNA | uncharacterized LOC107280382(LOC107280382) | coding protein | psRNATarget | |||||||||
XM_015774630.1 |
|
1.5 | PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107280382 (LOC107280382), transcript variant X2, mRNA | uncharacterized LOC107280382(LOC107280382) | coding protein | psRNATarget |