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BaseInfo

ncRNA ID novel_osa_miR2819
Species Oryza sativa
Class miRNA
Genome position Chr4:3659477-3659642 [-]
Reference genome IRGSP-1.0
Source SRR2040381
Length 24
Mature sequence(if miRNA) 1 - AUGGUCAAAACGCUAAACACGGAU - 24
Stem-loop(if miRNA) -- UA   C  A     -                      AAA      -UU      UUUAUUGUUAUUACAUGAUAAAACAU
  U  UGU UA CGUUU GACCGUUCGUCUUAUUUGAAAA   UUAUGA   AGUAUU                          G
  |  ||| || ||||| ||||||||||||||||||||||   ||||||   ||||||                          G
  G  ACA AU GCAAA CUGGUAAGCAGAAUAAACUUUU   AAUACU   UUAAUU                          G
UA GC   A  C     A                      -AA      UUU      UUUUUAAUUAGUGUGUAUUUCAUGAU
Stem-loop sequence UUAUGUCUAACGUUUGACCGUUCGUCUUAUUUGAAAAAAAUUAUGAUUAGUAUUUUUAUUGUUAUUACAUGAUAAAACAUGGGUAGUACUUUAUGUGUGAUUAAUUUUUUUAAUUUUUUCAUAAAAUUUUCAAAUAAGACGAAUGGUCAAAACGCUAAACACGGAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_015774629.1
ncRNA:24   UAGGCACAAAUCGCAAAACUGGUA   1
  ||||||||||||||*|||||||||
targets:1088   AUCCGUGUUUAGCGCUUUGACCAU   1111

1.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107280382 (LOC107280382), transcript variant X1, mRNA uncharacterized LOC107280382(LOC107280382) coding protein psRNATarget
XM_015774630.1
ncRNA:24   UAGGCACAAAUCGCAAAACUGGUA   1
  ||||||||||||||*|||||||||
targets:1064   AUCCGUGUUUAGCGCUUUGACCAU   1087

1.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107280382 (LOC107280382), transcript variant X2, mRNA uncharacterized LOC107280382(LOC107280382) coding protein psRNATarget