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BaseInfo

ncRNA ID	novel_osa_miR2776
Species	Oryza sativa
Class	miRNA
Genome position	Chr4:33772759-33772842 [+]
Reference genome	IRGSP-1.0
Source	SRR2040380
Length	21
Mature sequence(if miRNA)	1 - ACCGGAUGUGACAUAUUCUAG - 21
Stem-loop(if miRNA)	--                        G UA  C   A    A   ACCGGAUGUGACAUAUUCUAGUAC A  AA CUG ACAU U   |||||||||||||||||||||||| |  || ||| ||||   UGGCUUACACUGUGUAGGAUCAUG U  UU GAU UGUA G CC                        A GC  A   C    U
Stem-loop sequence	ACCGGAUGUGACAUAUUCUAGUACGAUAAACCUGAACAUAUGUAUGUCUAGAUUCGUAGUACUAGGAUGUGUCACAUUCGGUCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK287908.1	ncRNA:21   GAUCUUAUACAGUGUAGGCCA   1   |||||||=||||||||||||| targets:1268   CUAGAAUGUGUCACAUCCGGU   1288 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J065212K06, full insert sequence	NA	coding protein	psRNATarget
XM_015787270.1	ncRNA:21   GAUCUUAUACAGUGUAGGCCA   1   ||||=||=||||||||||||| targets:5928   CUAGGAUGUGUCACAUCCGGU   5948 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4341670 (LOC4341670), transcript variant X1, mRNA	uncharacterized LOC4341670(Os06g0647801)	coding protein	psRNATarget
HI404281.1	ncRNA:21   GAUCUUAUACAGUGUAGGCCA   1   ||||||||||||||||||*|| targets:51   CUAGAAUAUGUCACAUCCAGU   71 Target Full Sequence	1.5	Sequence 2406 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236411.1	ncRNA:21   GAUCUUAUACAGUGUAGGCCA   1   ||||||||||||||||||*|| targets:51   CUAGAAUAUGUCACAUCCAGU   71 Target Full Sequence	1.5	Sequence 2406 from Patent EP2985353	NA	coding protein	psRNATarget
JB164742.1	ncRNA:21   GAUCUUAUACAGUGUAGGCCA   1   ||||||||||||||||||*|| targets:51   CUAGAAUAUGUCACAUCCAGU   71 Target Full Sequence	1.5	Sequence 2406 from Patent EP2559767	NA	coding protein	psRNATarget
HI403967.1	ncRNA:21   GAUCUUAUACAGUGUAGGCCA   1   ||||||||||||||||||*|| targets:72   CUAGAAUAUGUCACAUCCAGU   92 Target Full Sequence	1.5	Sequence 2092 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236097.1	ncRNA:21   GAUCUUAUACAGUGUAGGCCA   1   ||||||||||||||||||*|| targets:72   CUAGAAUAUGUCACAUCCAGU   92 Target Full Sequence	1.5	Sequence 2092 from Patent EP2985353	NA	coding protein	psRNATarget
JB164428.1	ncRNA:21   GAUCUUAUACAGUGUAGGCCA   1   ||||||||||||||||||*|| targets:72   CUAGAAUAUGUCACAUCCAGU   92 Target Full Sequence	1.5	Sequence 2092 from Patent EP2559767	NA	coding protein	psRNATarget
AK061182.1	ncRNA:21   GAUCUUAUACAGUGUAGGCCA   1   ||||||||||||||||||*|| targets:889   CUAGAAUAUGUCACAUCCAGU   909 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:006-209-D09, full insert sequence	NA	coding protein	psRNATarget
XM_015759388.1	ncRNA:21   GAUCUUAUACAGUGUAGGCCA   1   ||||||||||||||||||*|| targets:465   CUAGAAUAUGUCACAUCCAGU   485 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group ent-cassadiene C2-hydroxylase-like (LOC4348721), transcript variant X2, mRNA	ent-cassadiene C2-hydroxylase-like(LOC4348721)	coding protein	psRNATarget
AK288796.1	ncRNA:21   GAUCUUAUACAGUGUAGGCCA   1   ||||||||||||||||||*|| targets:608   CUAGAAUAUGUCACAUCCAGU   628 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090070F05, full insert sequence	NA	coding protein	psRNATarget
LQ236010.1	ncRNA:21   GAUCUUAUACAGUGUAGGCCA   1   =|||||||||||||||||*|| targets:72   UUAGAAUAUGUCACAUCCAGU   92 Target Full Sequence	1.5	Sequence 2005 from Patent EP2985353	NA	coding protein	psRNATarget
HI403880.1	ncRNA:21   GAUCUUAUACAGUGUAGGCCA   1   =|||||||||||||||||*|| targets:72   UUAGAAUAUGUCACAUCCAGU   92 Target Full Sequence	1.5	Sequence 2005 from Patent EP2074227	NA	coding protein	psRNATarget
JB164341.1	ncRNA:21   GAUCUUAUACAGUGUAGGCCA   1   =|||||||||||||||||*|| targets:72   UUAGAAUAUGUCACAUCCAGU   92 Target Full Sequence	1.5	Sequence 2005 from Patent EP2559767	NA	coding protein	psRNATarget
AK288458.1	ncRNA:21   GAUCUUAUACAGUGUAGGCCA   1   |||||||=||||||||||*|| targets:1373   CUAGAAUGUGUCACAUCCAGU   1393 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090035E13, full insert sequence	NA	coding protein	psRNATarget
LQ235935.1	ncRNA:21   GAUCUUAUACAGUGUAGGCCA   1   |||*||*=||||||||||||| targets:63   CUAUAAAGUGUCACAUCCGGU   83 Target Full Sequence	3.0	Sequence 1930 from Patent EP2985353	NA	coding protein	psRNATarget
HI403805.1	ncRNA:21   GAUCUUAUACAGUGUAGGCCA   1   |||*||*=||||||||||||| targets:63   CUAUAAAGUGUCACAUCCGGU   83 Target Full Sequence	3.0	Sequence 1930 from Patent EP2074227	NA	coding protein	psRNATarget
JB164266.1	ncRNA:21   GAUCUUAUACAGUGUAGGCCA   1   |||*||*=||||||||||||| targets:63   CUAUAAAGUGUCACAUCCGGU   83 Target Full Sequence	3.0	Sequence 1930 from Patent EP2559767	NA	coding protein	psRNATarget