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BaseInfo

ncRNA ID	novel_osa_miR2775
Species	Oryza sativa
Class	miRNA
Genome position	Chr4:32408269-32408382 [+]
Reference genome	IRGSP-1.0
Source	SRR2040380;SRR2040409;SRR3123645;SRR5049786;SRR1738226;SRR1738227
Length	21
Mature sequence(if miRNA)	94 - AAAAUGCUAUAAUGACUUGCA - 114
Stem-loop(if miRNA)	--                  A CAC       A    A     A        AUGAU   UAAGUCAUUGUAGCAUUU C   AUUUAUA UGAU UUAAU AAUCUAGA     A   |||||||||||||||||| |   ||||||| |||| ||||| ||||||||   GUUCAGUAAUAUCGUAAA G   UAAGUAU ACUA AAUUA UUAGAUCU     U AC                  A AUA       A    C     C        GUAUA
Stem-loop sequence	UAAGUCAUUGUAGCAUUUACCACAUUUAUAAUGAUAUUAAUAAAUCUAGAAUGAUAUAUAUGUCUAGAUUCAUUAACAUCAAUAUGAAUAUAGAAAAUGCUAUAAUGACUUGCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015785393.1	ncRNA:21   ACGUUCAGUAAUAUCGUAAAA   1   ||=|||||||||||||||||| targets:1557   UGUAAGUCAUUAUAGCAUUUU   1577 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group phosphoglycerate mutase-like protein AT74H (LOC4339877), mRNA	phosphoglycerate mutase-like protein AT74H(LOC4339877)	coding protein	psRNATarget
AK318560.1	ncRNA:21   ACGUUCAGUAAUAUCGUAAAA   1   ||=|||||||||||||||||| targets:1119   UGUAAGUCAUUAUAGCAUUUU   1139 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J075170N13, full insert sequence	NA	coding protein	psRNATarget
CT836294.1	ncRNA:21   ACGUUCAGUAAUAUCGUAAAA   1   ||=|||||||||||||||||* targets:1213   UGUAAGUCAUUAUAGCAUUUC   1233 Target Full Sequence	2.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN014A10, full insert sequence	NA	coding protein	psRNATarget
XM_015788932.1	ncRNA:21   ACGUUCAGUAAUAUCGUAAAA   1   ||=||||=||||||||||||* targets:2895   UGUAAGUUAUUAUAGCAUUUC   2915 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group kanadaptin (LOC4340752), mRNA	kanadaptin(LOC4340752)	coding protein	psRNATarget
CT831392.1	ncRNA:21   ACGUUCAGUAAUAUCGUAAAA   1   ||=||||||||*||||||||| targets:408   UGUAAGUCAUUCUAGCAUUUU   428 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN035F20, full insert sequence	NA	coding protein	psRNATarget
XM_015779859.1	ncRNA:21   ACGUUCAGUAAUAUCGUAAAA   1   ||=||||||||*||||||||| targets:922   UGUAAGUCAUUUUAGCAUUUU   942 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group formin-like protein 3 (LOC4335722), mRNA	formin-like protein 3(LOC4335722)	coding protein	psRNATarget
AK070352.1	ncRNA:21   ACGUUCAGUAAUAUCGUAAAA   1   ||=||||||||*||||||||| targets:414   UGUAAGUCAUUCUAGCAUUUU   434 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023051F10, full insert sequence	NA	coding protein	psRNATarget
CT833662.1	ncRNA:21   ACGUUCAGUAAUAUCGUAAAA   1   ||=||||||||*||||||||| targets:1028   UGUAAGUCAUUUUAGCAUUUU   1048 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN049L15, full insert sequence	NA	coding protein	psRNATarget
XM_015763560.1	ncRNA:21   ACGUUCAGUAAUAUCGUAAAA   1   ||=||||||||*||||||||| targets:980   UGUAAGUCAUUCUAGCAUUUU   1000 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107278415 (LOC107278415), mRNA	uncharacterized LOC107278415(LOC107278415)	coding protein	psRNATarget
AK110888.1	ncRNA:21   ACGUUCAGUAAUAUCGUAAAA   1   ||=||||||||*||||||||| targets:1197   UGUAAGUCAUUCUAGCAUUUU   1217 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-172-H04, full insert sequence	NA	coding protein	psRNATarget
XM_015764394.1	ncRNA:21   ACGUUCAGUAAUAUCGUAAAA   1   ||=||||||||*||||||||| targets:1296   UGUAAGUCAUUCUAGCAUUUU   1316 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group vesicle-associated membrane protein 721 (LOC4352920), mRNA	vesicle-associated membrane protein 721(LOC4352920)	coding protein	psRNATarget
XM_015778179.1	ncRNA:21   ACGUUCAGUAAUAUCGUAAAA   1   ||=||||||||*||||||||| targets:1624   UGUAAGUCAUUCUAGCAUUUU   1644 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group methylthioribose kinase 2 (LOC107276080), mRNA	methylthioribose kinase 2(LOC107276080)	coding protein	psRNATarget
AK072906.1	ncRNA:21   ACGUUCAGUAAUAUCGUAAAA   1   ||=||||||||*||||||||| targets:2717   UGUAAGUCAUUCUAGCAUUUU   2737 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023147K18, full insert sequence	NA	coding protein	psRNATarget
XM_015759908.1	ncRNA:21   ACGUUCAGUAAUAUCGUAAAA   1   ||=||||||||*||||||||| targets:917   UGUAAGUCAUUCUAGCAUUUU   937 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group disease resistance protein RPM1 (LOC4350124), mRNA	disease resistance protein RPM1(LOC4350124)	coding protein	psRNATarget
AK120281.1	ncRNA:21   ACGUUCAGUAAUAUCGUAAAA   1   ||=||||||||*||||||||| targets:1045   UGUAAGUCAUUCUAGCAUUUU   1065 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013049I08, full insert sequence	NA	coding protein	psRNATarget
XM_015769825.1	ncRNA:21   ACGUUCAGUAAUAUCGUAAAA   1   ||=||||||||*||||||||| targets:2077   UGUAAGUCAUUUUAGCAUUUU   2097 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group BTB/POZ domain-containing protein At4g30940 (LOC4329965), mRNA	BTB/POZ domain-containing protein At4g30940(LOC4329965)	coding protein	psRNATarget
AK289039.1	ncRNA:21   ACGUUCAGUAAUAUCGUAAAA   1   ||=||||||||*||||||||| targets:73   UGUAAGUCAUUUUAGCAUUUU   93 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090091N23, full insert sequence	NA	coding protein	psRNATarget
AK288988.1	ncRNA:21   ACGUUCAGUAAUAUCGUAAAA   1   ||=||||||||*||||||||| targets:923   UGUAAGUCAUUCUAGCAUUUU   943 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090086L17, full insert sequence	NA	coding protein	psRNATarget
XM_015778291.1	ncRNA:21   ACGUUCAGUAAUAUCGUAAAA   1   ||=||||||||*||||||||| targets:67   UGUAAGUCAUUUUAGCAUUUU   87 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group protein LURP-one-related 6 (LOC4335964), mRNA	protein LURP-one-related 6(LOC4335964)	coding protein	psRNATarget
AK121342.1	ncRNA:21   ACGUUCAGUAAUAUCGUAAAA   1   ||=||||||||*||||||||| targets:4547   UGUAAGUCAUUCUAGCAUUUU   4567 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023121A11, full insert sequence	NA	coding protein	psRNATarget
AK288216.1	ncRNA:21   ACGUUCAGUAAUAUCGUAAAA   1   ||=||||||||*||||||||| targets:2082   UGUAAGUCAUUUUAGCAUUUU   2102 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090011C22, full insert sequence	NA	coding protein	psRNATarget
XM_015789040.1	ncRNA:21   ACGUUCAGUAAUAUCGUAAAA   1   ||=||||||||*||||||||| targets:4713   UGUAAGUCAUUCUAGCAUUUU   4733 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9266525 (LOC9266525), transcript variant X1, mRNA	uncharacterized LOC9266525(LOC9266525)	coding protein	psRNATarget
AK288871.1	ncRNA:21   ACGUUCAGUAAUAUCGUAAAA   1   ||=||||||||*||||||||| targets:4279   UGUAAGUCAUUCUAGCAUUUU   4299 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090078G09, full insert sequence	NA	coding protein	psRNATarget
CT837490.1	ncRNA:21   ACGUUCAGUAAUAUCGUAAAA   1   |||||||||||*||||||||* targets:833   UGCAAGUCAUUCUAGCAUUUC   853 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA109F07, full insert sequence	NA	coding protein	psRNATarget
AK070550.1	ncRNA:21   ACGUUCAGUAAUAUCGUAAAA   1   |||||||||||*||||||||* targets:2612   UGCAAGUCAUUCUAGCAUUUC   2632 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023061C04, full insert sequence	NA	coding protein	psRNATarget
XM_015780917.1	ncRNA:21   ACGUUCAGUAAUAUCGUAAAA   1   |||||||||||*||||||||* targets:4676   UGCAAGUCAUUCUAGCAUUUC   4696 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group DExH-box ATP-dependent RNA helicase DExH7, chloroplastic (LOC9267691), transcript variant X2, mRNA	DExH-box ATP-dependent RNA helicase DExH7, chloroplastic(LOC9267691)	coding protein	psRNATarget
XM_015780918.1	ncRNA:21   ACGUUCAGUAAUAUCGUAAAA   1   |||||||||||*||||||||* targets:4725   UGCAAGUCAUUCUAGCAUUUC   4745 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group DExH-box ATP-dependent RNA helicase DExH7, chloroplastic (LOC9267691), transcript variant X3, mRNA	DExH-box ATP-dependent RNA helicase DExH7, chloroplastic(LOC9267691)	coding protein	psRNATarget
XM_015780916.1	ncRNA:21   ACGUUCAGUAAUAUCGUAAAA   1   |||||||||||*||||||||* targets:4734   UGCAAGUCAUUCUAGCAUUUC   4754 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group DExH-box ATP-dependent RNA helicase DExH7, chloroplastic (LOC9267691), transcript variant X1, mRNA	DExH-box ATP-dependent RNA helicase DExH7, chloroplastic(LOC9267691)	coding protein	psRNATarget
CT831438.1	ncRNA:21   ACGUUCAGUAAUAUCGUAAAA   1   |*=||||||||||||=||||| targets:727   UAUAAGUCAUUAUAGUAUUUU   747 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN050I07, full insert sequence	NA	coding protein	psRNATarget
AK066216.1	ncRNA:21   ACGUUCAGUAAUAUCGUAAAA   1   ||*||||||||*||||||||| targets:1031   UGGAAGUCAUUUUAGCAUUUU   1051 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013052J02, full insert sequence	NA	coding protein	psRNATarget
CT832810.1	ncRNA:21   ACGUUCAGUAAUAUCGUAAAA   1   ||*||||||||*||||||||| targets:1028   UGGAAGUCAUUUUAGCAUUUU   1048 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA121K07, full insert sequence	NA	coding protein	psRNATarget
XM_015777391.1	ncRNA:21   ACGUUCAGUAAUAUCGUAAAA   1   ||*||||||||*||||||||| targets:1281   UGGAAGUCAUUUUAGCAUUUU   1301 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4333864 (LOC4333864), mRNA	uncharacterized LOC4333864(LOC4333864)	coding protein	psRNATarget
CT837577.1	ncRNA:21   ACGUUCAGUAAUAUCGUAAAA   1   |*=||||||||*||||||||| targets:200   UCUAAGUCAUUUUAGCAUUUU   220 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN009E14, full insert sequence	NA	coding protein	psRNATarget
XM_015778842.1	ncRNA:21   ACGUUCAGUAAUAUCGUAAAA   1   |*=||||||||*||||||||| targets:1117   UAUAAGUCAUUCUAGCAUUUU   1137 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group putative RING-H2 finger protein ATL50 (LOC4336763), mRNA	putative RING-H2 finger protein ATL50(LOC4336763)	coding protein	psRNATarget
XM_015773673.1	ncRNA:21   ACGUUCAGUAAUAUCGUAAAA   1   |*=||||||||*||||||||| targets:1763   UAUAAGUCAUUCUAGCAUUUU   1783 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group cytochrome P450 78A5 (LOC4333404), mRNA	cytochrome P450 78A5(LOC4333404)	coding protein	psRNATarget
XM_015756761.1	ncRNA:21   ACGUUCAGUAAUAUCGUAAAA   1   |*=||||||||*||||||||| targets:3347   UAUAAGUCAUUCUAGCAUUUU   3367 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group G-type lectin S-receptor-like serine/threonine-protein kinase At5g35370 (LOC4347249), mRNA	G-type lectin S-receptor-like serine/threonine-protein kinase At5g35370(LOC4347249)	coding protein	psRNATarget
CT833422.1	ncRNA:21   ACGUUCAGUAAUAUCGUAAAA   1   |*=||*||||||||||||||* targets:135   UAUAAAUCAUUAUAGCAUUUC   155 Target Full Sequence	3.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA030N21, full insert sequence	NA	coding protein	psRNATarget
XM_015774190.1	ncRNA:21   ACGUUCAGUAAUAUCGUAAAA   1   |*=||*||||||||||||||* targets:1389   UAUAAAUCAUUAUAGCAUUUC   1409 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group IAA-amino acid hydrolase ILR1-like 4 (LOC4334708), mRNA	IAA-amino acid hydrolase ILR1-like 4(LOC4334708)	coding protein	psRNATarget