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BaseInfo

ncRNA ID novel_osa_miR2772
Species Oryza sativa
Class miRNA
Genome position Chr4:23837810-23837915 [+]
Reference genome IRGSP-1.0
Source SRR2040380;SRR2040383;SRR2040385;SRR2040386;SRR2040387;SRR2040389;SRR2040390;SRR2040392;SRR2040393;SRR2040394;SRR2040404;SRR2040405;SRR2040406;SRR2040408;SRR2040410;SRR2040411
Length 24
Mature sequence(if miRNA) 83 - GAAUGUGGACGAUGUUAGAAAGUC - 106
Stem-loop(if miRNA) --             CA            --G         C      U  CAC
  CUUUCUAGCAUUG  CACAUUUAUAUA   AUGUUAAUG AUUUAG CA   A
  |||||||||||||  ||||||||||||   ||||||||| |||||| ||
  GAAAGAUUGUAGC  GUGUAAGUAUAU   UACAAUUAC UAGAUC GU   U
CU             AG            AUA         U      U  AUA
Stem-loop sequence CUUUCUAGCAUUGCACACAUUUAUAUAGAUGUUAAUGCAUUUAGUCACACAUAUAUGUCUAGAUUCAUUAACAUAUAUAUAUGAAUGUGGACGAUGUUAGAAAGUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK061392.1
ncRNA:24   CUGAAAGAUUGUAGCAGGUGUAAG   1
  |||||||||||||=||||||||||
targets:1156   GACUUUCUAACAUUGUCCACAUUC   1179

1.5 Oryza sativa Japonica Group cDNA clone:006-305-D03, full insert sequence NA coding protein psRNATarget
CT835628.1
ncRNA:24   CUGAAAGAUUGUAGCAGGUGUAAG   1
  |||||||||=|||=||||||||||
targets:1168   GACUUUCUAGCAUUGUCCACAUUC   1191

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA042P11, full insert sequence NA coding protein psRNATarget
XM_015764678.1
ncRNA:24   CUGAAAGAUUGUAGCAGGUGUAAG   1
  |||||||||=|||=||||||||||
targets:1604   GACUUUCUAGCAUUGUCCACAUUC   1627

2.5 PREDICTED: Oryza sativa Japonica Group mannan endo-1,4-beta-mannosidase 8 (LOC9271116), mRNA mannan endo-1,4-beta-mannosidase 8(LOC9271116) coding protein psRNATarget
AK073522.1
ncRNA:24   CUGAAAGAUUGUAGCAGGUGUAAG   1
  |||||||||=|||=||||||||||
targets:2488   GACUUUCUAGCAUUGUCCACAUUC   2511

2.5 Oryza sativa Japonica Group cDNA clone:J033046G09, full insert sequence NA coding protein psRNATarget
XM_015767218.1
ncRNA:24   CUGAAAGAUUGUAGCAGGUGUAAG   1
  |||||||||=|||=||||||||||
targets:3699   GACUUUCUAGCAUUGUCCACAUUC   3722

2.5 PREDICTED: Oryza sativa Japonica Group putative pentatricopeptide repeat-containing protein At5g43820 (LOC4329106), transcript variant X7, mRNA putative pentatricopeptide repeat-containing protein At5g43820(LOC4329106) coding protein psRNATarget
XM_015767215.1
ncRNA:24   CUGAAAGAUUGUAGCAGGUGUAAG   1
  |||||||||=|||=||||||||||
targets:3795   GACUUUCUAGCAUUGUCCACAUUC   3818

2.5 PREDICTED: Oryza sativa Japonica Group putative pentatricopeptide repeat-containing protein At5g43820 (LOC4329106), transcript variant X4, mRNA putative pentatricopeptide repeat-containing protein At5g43820(LOC4329106) coding protein psRNATarget
XM_015767217.1
ncRNA:24   CUGAAAGAUUGUAGCAGGUGUAAG   1
  |||||||||=|||=||||||||||
targets:3854   GACUUUCUAGCAUUGUCCACAUUC   3877

2.5 PREDICTED: Oryza sativa Japonica Group putative pentatricopeptide repeat-containing protein At5g43820 (LOC4329106), transcript variant X6, mRNA putative pentatricopeptide repeat-containing protein At5g43820(LOC4329106) coding protein psRNATarget
XM_015767212.1
ncRNA:24   CUGAAAGAUUGUAGCAGGUGUAAG   1
  |||||||||=|||=||||||||||
targets:3921   GACUUUCUAGCAUUGUCCACAUUC   3944

2.5 PREDICTED: Oryza sativa Japonica Group putative pentatricopeptide repeat-containing protein At5g43820 (LOC4329106), transcript variant X2, mRNA putative pentatricopeptide repeat-containing protein At5g43820(LOC4329106) coding protein psRNATarget
XM_015767214.1
ncRNA:24   CUGAAAGAUUGUAGCAGGUGUAAG   1
  |||||||||=|||=||||||||||
targets:3950   GACUUUCUAGCAUUGUCCACAUUC   3973

2.5 PREDICTED: Oryza sativa Japonica Group putative pentatricopeptide repeat-containing protein At5g43820 (LOC4329106), transcript variant X3, mRNA putative pentatricopeptide repeat-containing protein At5g43820(LOC4329106) coding protein psRNATarget
XM_015767211.1
ncRNA:24   CUGAAAGAUUGUAGCAGGUGUAAG   1
  |||||||||=|||=||||||||||
targets:4017   GACUUUCUAGCAUUGUCCACAUUC   4040

2.5 PREDICTED: Oryza sativa Japonica Group putative pentatricopeptide repeat-containing protein At5g43820 (LOC4329106), transcript variant X1, mRNA putative pentatricopeptide repeat-containing protein At5g43820(LOC4329106) coding protein psRNATarget
XM_015790894.1
ncRNA:24   CUGAAAGAUUGUAGCAGGUGUAAG   1
  *||||||||=|||=||||||||||
targets:554   CACUUUCUAGCAUUGUCCACAUUC   577

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107276821 (LOC107276821), mRNA uncharacterized LOC107276821(LOC107276821) coding protein psRNATarget
AK242012.1
ncRNA:24   CUGAAAGAUUGUAGCAGGUGUAAG   1
  |||||||||*|||=||||||||||
targets:714   GACUUUCUAUCAUUGUCCACAUUC   737

2.5 Oryza sativa Japonica Group cDNA, clone: J075106H22, full insert sequence NA coding protein psRNATarget
XM_015755177.1
ncRNA:24   CUGAAAGAUUGUAGCAGGUGUAAG   1
  |||||||||*|||=||||||||||
targets:1752   GACUUUCUACCAUUGUCCACAUUC   1775

2.5 PREDICTED: Oryza sativa Japonica Group glutathione S-transferase T3 (LOC4346703), transcript variant X1, mRNA glutathione S-transferase T3(LOC4346703) coding protein psRNATarget
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