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BaseInfo

ncRNA ID	novel_osa_miR2771
Species	Oryza sativa
Class	miRNA
Genome position	Chr4:21474878-21475060 [+]
Reference genome	IRGSP-1.0
Source	SRR2040380;SRR2040388
Length	22
Mature sequence(if miRNA)	162 - UUAGAGUAGUUUGACUUUGACU - 183
Stem-loop(if miRNA)	--                             U    G         A           U    -   A ACUA   -UA    GA        UC   UUAAAGUCAAACUAUUCUAAGUUUGACUA UUUU UAGAAAAAA UAGUAAUAUUU UAAC CCA G    AUA   UUAU  AAAUUUAU  A   ||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||| |||| ||| |    |||   ||||  ||||||||   AGUUUCAGUUUGAUGAGAUUCAAACUGAU GAGA AUCUUUUUU AUCAUUAUAAA GUUG GGU C    UAU   AGUA  UUUAGAUA  A UC                             U    G         C           U    U   - ---G   CAA    -A        UU
Stem-loop sequence	UUAAAGUCAAACUAUUCUAAGUUUGACUAUUUUUGUAGAAAAAAAUAGUAAUAUUUUUAACCCAAGACUAAUAUAUUAUGAAAAUUUAUUCAAUUAUAGAUUUAAUGAAACUAUGCUGGUGUUGUAAAUAUUACUACUUUUUUCUAGAGAGUUAGUCAAACUUAGAGUAGUUUGACUUUGACU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015773578.1	ncRNA:22   UCAGUUUCAGUUUGAUGAGAUU   1   =*|||||||||||||||||||| targets:294   GUUCAAAGUCAAACUACUCUAA   315 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group putative F-box protein At2g02030 (LOC9271925), transcript variant X3, mRNA	putative F-box protein At2g02030(LOC9271925)	coding protein	psRNATarget
JB164889.1	ncRNA:22   UCAGUUUCAGUUUGAUGAGAUU   1   =||||||*|||||||||||||| targets:25   GGUCAAAUUCAAACUACUCUAA   46 Target Full Sequence	1.0	Sequence 2553 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236558.1	ncRNA:22   UCAGUUUCAGUUUGAUGAGAUU   1   =||||||*|||||||||||||| targets:25   GGUCAAAUUCAAACUACUCUAA   46 Target Full Sequence	1.0	Sequence 2553 from Patent EP2985353	NA	coding protein	psRNATarget
HI404428.1	ncRNA:22   UCAGUUUCAGUUUGAUGAGAUU   1   =||||||*|||||||||||||| targets:25   GGUCAAAUUCAAACUACUCUAA   46 Target Full Sequence	1.0	Sequence 2553 from Patent EP2074227	NA	coding protein	psRNATarget
XM_015793379.1	ncRNA:22   UCAGUUUCAGUUUGAUGAGAUU   1   |*||||||||||||||=||||| targets:1800   AAUCAAAGUCAAACUAUUCUAA   1821 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group UDP-glycosyltransferase 89B2-like (LOC107281855), mRNA	UDP-glycosyltransferase 89B2-like(LOC107281855)	coding protein	psRNATarget
AK288527.1	ncRNA:22   UCAGUUUCAGUUUGAUGAGAUU   1   =||=||||||||||||||||*| targets:599   GGUUAAAGUCAAACUACUCUUA   620 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090044J18, full insert sequence	NA	coding protein	psRNATarget
XM_015786539.1	ncRNA:22   UCAGUUUCAGUUUGAUGAGAUU   1   |*|||||*||||||||||=||| targets:739   AAUCAAAAUCAAACUACUUUAA   760 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group basic blue protein-like (LOC107277353), mRNA	basic blue protein-like(LOC107277353)	coding protein	psRNATarget
CT835003.1	ncRNA:22   UCAGUUUCAGUUUGAUGAGAUU   1   =*|=*||*|||||||||||||| targets:193   GAUUUAACUCAAACUACUCUAA   214 Target Full Sequence	3.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN054K08, full insert sequence	NA	coding protein	psRNATarget