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BaseInfo

ncRNA ID	novel_osa_miR2770
Species	Oryza sativa
Class	miRNA
Genome position	Chr3:8395460-8395635 [+]
Reference genome	IRGSP-1.0
Source	SRR2040380
Length	24
Mature sequence(if miRNA)	153 - AUCAAACGUUGGACACGAAAACCC - 176
Stem-loop(if miRNA)	--        A            C  C         AUAAAUUUUUU      UU  U    UU UU --UU   AG   -         G   GUUUUCGU UCCAACGUUUGA UA CCGUCUUAU           UUAUGA  AG AUUU  A  G    GUU  AUG AUAAAAUAU A   |||||||| |||||||||||| || |||||||||           ||||||  || ||||  |  |    |||  ||| ||||||||| A   CAAAAGCA AGGUUGCAAACU GU GGCAGAAUA           AAUACU  UU UAAA  U  C    CAG  UGC UAUUUUAUA U CC        C            A  A         --AACUUUUUU      UU  U    UU UU UAUU   --   G         A
Stem-loop sequence	GUUUUCGUAUCCAACGUUUGACUACCCGUCUUAUAUAAAUUUUUUUUAUGAUUAGUAUUUUUAUUGUUGUUAGAUGAUAAAAUAUGAAUAAUAUUUUAUGCGUGACUUAUCUUUUUAAAUUUUUUUCAUAAUUUUUUCAAAUAAGACGGAUGAUCAAACGUUGGACACGAAAACCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015759983.1	ncRNA:24   CCCAAAAGCACAGGUUGCAAACUA   1   ||||||*||||||||||||||||| targets:3512   GGGUUUCCGUGUCCAACGUUUGAU   3535 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9270101 (LOC9270101), transcript variant X4, mRNA	uncharacterized LOC9270101(LOC9270101)	coding protein	psRNATarget
CT832631.1	ncRNA:24   CCCAAAAGCACAGGUUGCAAACUA   1   ||||||*||||||||||||||||* targets:335   GGGUUUCCGUGUCCAACGUUUGAC   358 Target Full Sequence	2.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA021A12, full insert sequence	NA	coding protein	psRNATarget
CT832630.1	ncRNA:24   CCCAAAAGCACAGGUUGCAAACUA   1   ||||||*||||||||||||||||* targets:335   GGGUUUCCGUGUCCAACGUUUGAC   358 Target Full Sequence	2.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA020B12, full insert sequence	NA	coding protein	psRNATarget
XM_015760576.1	ncRNA:24   CCCAAAAGCACAGGUUGCAAACUA   1   *|||||*=|||||||||||||||| targets:1946   AGGUUUCUGUGUCCAACGUUUGAU   1969 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9272430 (LOC9272430), transcript variant X1, mRNA	uncharacterized LOC9272430(LOC9272430)	coding protein	psRNATarget
XM_015760578.1	ncRNA:24   CCCAAAAGCACAGGUUGCAAACUA   1   *|||||*=|||||||||||||||| targets:1862   AGGUUUCUGUGUCCAACGUUUGAU   1885 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9272430 (LOC9272430), transcript variant X3, mRNA	uncharacterized LOC9272430(LOC9272430)	coding protein	psRNATarget
AK108063.1	ncRNA:24   CCCAAAAGCACAGGUUGCAAACUA   1   *||||||||||*|||||||||||* targets:1342   UGGUUUUCGUGCCCAACGUUUGAC   1365 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-138-B04, full insert sequence	NA	coding protein	psRNATarget
JB164256.1	ncRNA:24   CCCAAAAGCACAGGUUGCAAACUA   1   *|*|||||||||=||||||||||* targets:6   AGAUUUUCGUGUUCAACGUUUGAC   29 Target Full Sequence	2.5	Sequence 1920 from Patent EP2559767	NA	coding protein	psRNATarget
HI403795.1	ncRNA:24   CCCAAAAGCACAGGUUGCAAACUA   1   *|*|||||||||=||||||||||* targets:6   AGAUUUUCGUGUUCAACGUUUGAC   29 Target Full Sequence	2.5	Sequence 1920 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235925.1	ncRNA:24   CCCAAAAGCACAGGUUGCAAACUA   1   *|*|||||||||=||||||||||* targets:6   AGAUUUUCGUGUUCAACGUUUGAC   29 Target Full Sequence	2.5	Sequence 1920 from Patent EP2985353	NA	coding protein	psRNATarget
XM_015792475.1	ncRNA:24   CCCAAAAGCACAGGUUGCAAACUA   1   |*||||*||||||||||||||||* targets:2601   GAGUUUCCGUGUCCAACGUUUGAC   2624 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group hydrophobic protein LTI6A (LOC4344028), transcript variant X4, mRNA	hydrophobic protein LTI6A(LOC4344028)	coding protein	psRNATarget
XM_015792473.1	ncRNA:24   CCCAAAAGCACAGGUUGCAAACUA   1   |*||||*||||||||||||||||* targets:2587   GAGUUUCCGUGUCCAACGUUUGAC   2610 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group hydrophobic protein LTI6A (LOC4344028), transcript variant X2, mRNA	hydrophobic protein LTI6A(LOC4344028)	coding protein	psRNATarget
AK064197.1	ncRNA:24   CCCAAAAGCACAGGUUGCAAACUA   1   ||*|*||||||||=|||||||||* targets:886   GGAUAUUCGUGUCUAACGUUUGAC   909 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-104-D06, full insert sequence	NA	coding protein	psRNATarget
AK288529.1	ncRNA:24   CCCAAAAGCACAGGUUGCAAACUA   1   *||*||*||||||||||||||||* targets:67   UGGCUUCCGUGUCCAACGUUUGAC   90 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090044M17, full insert sequence	NA	coding protein	psRNATarget
XM_015771325.1	ncRNA:24   CCCAAAAGCACAGGUUGCAAACUA   1   *|||*|*||||||||||||||||* targets:1208   UGGUCUCCGUGUCCAACGUUUGAC   1231 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group protein synthesis inhibitor I (LOC4324068), mRNA	protein synthesis inhibitor I(LOC4324068)	coding protein	psRNATarget
AK287584.1	ncRNA:24   CCCAAAAGCACAGGUUGCAAACUA   1   *|||*|*||||||||||||||||* targets:1185   UGGUCUCCGUGUCCAACGUUUGAC   1208 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J065044J10, full insert sequence	NA	coding protein	psRNATarget
AB051108.1	ncRNA:24   CCCAAAAGCACAGGUUGCAAACUA   1   *|||*|*||||||||||||||||* targets:1180   UGGUCUCCGUGUCCAACGUUUGAC   1203 Target Full Sequence	2.0	Oryza sativa RIP2 mRNA for ribosome inactivating protein 2, complete cds	NA	coding protein	psRNATarget
AK103707.1	ncRNA:24   CCCAAAAGCACAGGUUGCAAACUA   1   *|||*|*||||||||||||||||* targets:1190   UGGUCUCCGUGUCCAACGUUUGAC   1213 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J033136O07, full insert sequence	NA	coding protein	psRNATarget
XM_015772621.1	ncRNA:24   CCCAAAAGCACAGGUUGCAAACUA   1   ***|||*||||||||||||||||* targets:399   UAAUUUCCGUGUCCAACGUUUGAC   422 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4332894 (LOC4332894), mRNA	uncharacterized LOC4332894(LOC4332894)	coding protein	psRNATarget
AK070212.1	ncRNA:24   CCCAAAAGCACAGGUUGCAAACUA   1   **||||*|*||||||||||||||* targets:1276   AAGUUUCCAUGUCCAACGUUUGAC   1299 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J023044F01, full insert sequence	NA	coding protein	psRNATarget
XM_015768707.1	ncRNA:24   CCCAAAAGCACAGGUUGCAAACUA   1   ***|*|||*||||||||||||||* targets:1224   CACUGUUCAUGUCCAACGUUUGAC   1247 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group cysteine-rich repeat secretory protein 15-like (LOC107279942), transcript variant X3, mRNA	cysteine-rich repeat secretory protein 15-like(LOC107279942)	coding protein	psRNATarget
XM_015768705.1	ncRNA:24   CCCAAAAGCACAGGUUGCAAACUA   1   ***|*|||*||||||||||||||* targets:1224   CACUGUUCAUGUCCAACGUUUGAC   1247 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group cysteine-rich repeat secretory protein 15-like (LOC107279942), transcript variant X1, mRNA	cysteine-rich repeat secretory protein 15-like(LOC107279942)	coding protein	psRNATarget
XM_015768708.1	ncRNA:24   CCCAAAAGCACAGGUUGCAAACUA   1   ***|*|||*||||||||||||||* targets:1224   CACUGUUCAUGUCCAACGUUUGAC   1247 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group cysteine-rich repeat secretory protein 15-like (LOC107279942), transcript variant X4, mRNA	cysteine-rich repeat secretory protein 15-like(LOC107279942)	coding protein	psRNATarget
XM_015768706.1	ncRNA:24   CCCAAAAGCACAGGUUGCAAACUA   1   ***|*|||*||||||||||||||* targets:1224   CACUGUUCAUGUCCAACGUUUGAC   1247 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group cysteine-rich repeat secretory protein 15-like (LOC107279942), transcript variant X2, mRNA	cysteine-rich repeat secretory protein 15-like(LOC107279942)	coding protein	psRNATarget