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BaseInfo

ncRNA ID	novel_osa_miR2769
Species	Oryza sativa
Class	miRNA
Genome position	Chr3:1649958-1650128 [-]
Reference genome	IRGSP-1.0
Source	SRR2040380
Length	22
Mature sequence(if miRNA)	150 - UUUUUACUUGUAACGUUUGACC - 171
Stem-loop(if miRNA)	--      C      C                          A    A    UAUUAUUUAUCUUAU     A    CUU    AU   UUUUUA UUGUAA GUUUGACCACUCGUCUUAUUCAAAUU UUUU AAAU               UUGUG CUUA   UAUU  C   |||||| |||||| |||||||||||||||||||||||||| |||| ||||               ||||| ||||   ||||   AAAAAU AAUGUU CAAACUGGUGAGUAGAAUAAGUUUAA AAAA UUUA               AACAC GAAU   AUAA  U UC      A      A                          A    G    UAUUUUUUGCUUUUC     -    UUC    CA
Stem-loop sequence	UUUUUACUUGUAACGUUUGACCACUCGUCUUAUUCAAAUUAUUUUAAAAUUAUUAUUUAUCUUAUUUGUGACUUACUUUAUUAUCUACAAUACUUUAAGCACAACUUUUCGUUUUUUAUAUUUGAAAAAAAUUUGAAUAAGAUGAGUGGUCAAACAUUGUAAAUAAAAACU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288319.1	ncRNA:22   CCAGUUUGCAAUGUUCAUUUUU   1   |||||||||||=|||||||||| targets:1854   GGUCAAACGUUGCAAGUAAAAA   1875 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090021O08, full insert sequence	NA	coding protein	psRNATarget
AK289013.1	ncRNA:22   CCAGUUUGCAAUGUUCAUUUUU   1   *||=||||*||||||||||||| targets:4002   AGUUAAACAUUACAAGUAAAAA   4023 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090089J03, full insert sequence	NA	coding protein	psRNATarget
AK109584.1	ncRNA:22   CCAGUUUGCAAUGUUCAUUUUU   1   ||||||||*||||||*|||||| targets:1116   GGUCAAACAUUACAAAUAAAAA   1137 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-137-A10, full insert sequence	NA	coding protein	psRNATarget
XM_015761210.1	ncRNA:22   CCAGUUUGCAAUGUUCAUUUUU   1   |*||||||||||||*||||||| targets:1338   GAUCAAACGUUACAUGUAAAAA   1359 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4327188 (LOC4327188), transcript variant X2, mRNA	uncharacterized LOC4327188(LOC4327188)	coding protein	psRNATarget
XM_015761204.1	ncRNA:22   CCAGUUUGCAAUGUUCAUUUUU   1   |*||||||||||||*||||||| targets:1371   GAUCAAACGUUACAUGUAAAAA   1392 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4327188 (LOC4327188), transcript variant X1, mRNA	uncharacterized LOC4327188(LOC4327188)	coding protein	psRNATarget
XM_015761224.1	ncRNA:22   CCAGUUUGCAAUGUUCAUUUUU   1   |*||||||||||||*||||||| targets:1416   GAUCAAACGUUACAUGUAAAAA   1437 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4327188 (LOC4327188), transcript variant X4, mRNA	uncharacterized LOC4327188(LOC4327188)	coding protein	psRNATarget
XM_015761216.1	ncRNA:22   CCAGUUUGCAAUGUUCAUUUUU   1   |*||||||||||||*||||||| targets:1442   GAUCAAACGUUACAUGUAAAAA   1463 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4327188 (LOC4327188), transcript variant X3, mRNA	uncharacterized LOC4327188(LOC4327188)	coding protein	psRNATarget