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BaseInfo

ncRNA ID novel_osa_miR2767
Species Oryza sativa
Class miRNA
Genome position Chr3:16920196-16920310 [-]
Reference genome IRGSP-1.0
Source SRR2040380
Length 22
Mature sequence(if miRNA) 94 - UAAGACUUUCUAACAUUUGCCU - 115
Stem-loop(if miRNA) --            A    U               U                A    U
  UAAGACUUUCUA CAUU GCCUACAUUCAUAUA AUGUUAAUGAAUCUAG CAUA A
  |||||||||||| |||| ||||||||||||||| |||||||||||||||| ||||
  AUUCUGAAAGAU GUAA UGGGUGUAAGUAUGU UACAAUUACUUAGAUC GUGU U
AU            C    -               C                C    G
Stem-loop sequence UAAGACUUUCUAACAUUUGCCUACAUUCAUAUAUAUGUUAAUGAAUCUAGACAUAUAUGUGUGCCUAGAUUCAUUAACAUCUGUAUGAAUGUGGGUAAUGCUAGAAAGUCUUAUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK106777.1
ncRNA:22   UCCGUUUACAAUCUUUCAGAAU   1
  *|||*||||*||||||||||||
targets:1377   UGGCCAAUGCUAGAAAGUCUUA   1398

2.5 Oryza sativa Japonica Group cDNA clone:002-115-G12, full insert sequence NA coding protein psRNATarget
AK067660.1
ncRNA:22   UCCGUUUACAAUCUUUCAGAAU   1
  *||**|||||||||||||||||
targets:2790   UGGAUAAUGUUAGAAAGUCUUA   2811

2.0 Oryza sativa Japonica Group cDNA clone:J013116C06, full insert sequence NA coding protein psRNATarget
XM_015763234.1
ncRNA:22   UCCGUUUACAAUCUUUCAGAAU   1
  *||**|||||||||||||||||
targets:6371   UGGACAAUGUUAGAAAGUCUUA   6392

2.0 PREDICTED: Oryza sativa Japonica Group F-box protein At5g25290 (LOC4326973), transcript variant X1, mRNA F-box protein At5g25290(LOC4326973) coding protein psRNATarget