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BaseInfo

ncRNA ID	novel_osa_miR2766
Species	Oryza sativa
Class	miRNA
Genome position	Chr3:3771667-3771890 [+]
Reference genome	IRGSP-1.0
Source	SRR2040380
Length	22
Mature sequence(if miRNA)	1 - UUUAGAGUAUUAAAUAUGGACU - 22
Stem-loop(if miRNA)	--UUU               G C    -AA    A   A        A GA AG     C                 A  C       AU    A   AUCAAA  UUUACUGU      AGAGUAUUAAAUAUG A UAAU   AAAA CUA UUUCAUAA U  G  CUAAU CGUGAGACGGAUUUUUU AG CUAAUUA  CCAU AUU      AG        A      ||||||||||||||| | ||||   |||| ||| |||||||| |  |  ||||| ||||||||||||||||| || |||||||  |||| |||      ||        G      UCUCAUAAUUUGUAU U AUUA   UUUU GGU AAAGUAUU A  C  GAUUA GCGCUCUGCUUAGAAAA UC GAUUAAU  GGUA UAA      UG        C UUAAU               G C    AUA    A   -        C AA CU     A                 C  A       GC    C   ---AAC  UUACACUA
Stem-loop sequence	UUUAGAGUAUUAAAUAUGGACUAAUAAAAAAACUAAUUUCAUAAAUGAGAGCUAAUCCGUGAGACGGAUUUUUUAAGCCUAAUUAAUCCAUAAUUAUCAAAAGUUUACUGUAGCAUCACAUUGUCAAAAUCAUGGCGUAAUUAGACUCAAAAGAUUCGUCUCGCGAAUUAGUCCAAACUUAUGAAAUGGAUUUUAUAAUUACUGUAUGUUUAAUACUCUUAAUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK121287.1	ncRNA:22   UCAGGUAUAAAUUAUGAGAUUU   1   ||||=||||||||||||||||| targets:4601   AGUCUAUAUUUAAUACUCUAAA   4622 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J023108P15, full insert sequence	NA	coding protein	psRNATarget
AK120827.1	ncRNA:22   UCAGGUAUAAAUUAUGAGAUUU   1   ||||=||||||||||||||||| targets:4163   AGUCUAUAUUUAAUACUCUAAA   4184 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J023019E13, full insert sequence	NA	coding protein	psRNATarget
AK288720.1	ncRNA:22   UCAGGUAUAAAUUAUGAGAUUU   1   ||||=||||||||||||||||| targets:4040   AGUCUAUAUUUAAUACUCUAAA   4061 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090062N14, full insert sequence	NA	coding protein	psRNATarget
AK288793.1	ncRNA:22   UCAGGUAUAAAUUAUGAGAUUU   1   ||||=||||||||||||||||| targets:3272   AGUCUAUAUUUAAUACUCUAAA   3293 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090070C08, full insert sequence	NA	coding protein	psRNATarget
CT834429.1	ncRNA:22   UCAGGUAUAAAUUAUGAGAUUU   1   ||||=||||||||||||||||| targets:1501   AGUCUAUAUUUAAUACUCUAAA   1522 Target Full Sequence	1.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA203L19, full insert sequence	NA	coding protein	psRNATarget
AK288638.1	ncRNA:22   UCAGGUAUAAAUUAUGAGAUUU   1   ||||=||||||||||||||||| targets:439   AGUCUAUAUUUAAUACUCUAAA   460 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090055N09, full insert sequence	NA	coding protein	psRNATarget
AK288202.1	ncRNA:22   UCAGGUAUAAAUUAUGAGAUUU   1   ||||=||||||||||||||||| targets:1215   AGUCUAUAUUUAAUACUCUAAA   1236 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090008J03, full insert sequence	NA	coding protein	psRNATarget
AK288164.1	ncRNA:22   UCAGGUAUAAAUUAUGAGAUUU   1   ||||=||||||||||||||||| targets:1215   AGUCUAUAUUUAAUACUCUAAA   1236 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090002E02, full insert sequence	NA	coding protein	psRNATarget
CT831158.1	ncRNA:22   UCAGGUAUAAAUUAUGAGAUUU   1   ||||=||||||||||||||||| targets:777   AGUCUAUAUUUAAUACUCUAAA   798 Target Full Sequence	1.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA044E09, full insert sequence	NA	coding protein	psRNATarget
AK064594.1	ncRNA:22   UCAGGUAUAAAUUAUGAGAUUU   1   ||||=||||||||||||||||| targets:697   AGUCUAUAUUUAAUACUCUAAA   718 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:002-112-G08, full insert sequence	NA	coding protein	psRNATarget
CT837623.1	ncRNA:22   UCAGGUAUAAAUUAUGAGAUUU   1   ||||=||||||||||||||||| targets:716   AGUCUAUAUUUAAUACUCUAAA   737 Target Full Sequence	1.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN019I07, full insert sequence	NA	coding protein	psRNATarget
AK289087.1	ncRNA:22   UCAGGUAUAAAUUAUGAGAUUU   1   ||||=||||||||||||=|||| targets:4387   AGUCUAUAUUUAAUACUUUAAA   4408 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090095K03, full insert sequence	NA	coding protein	psRNATarget
XM_015779931.1	ncRNA:22   UCAGGUAUAAAUUAUGAGAUUU   1   ||||=|||||||||=||||||| targets:16   AGUCUAUAUUUAAUGCUCUAAA   37 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group probable disease resistance protein At4g14610 (LOC4336120), mRNA	probable disease resistance protein At4g14610(LOC4336120)	coding protein	psRNATarget
AK100874.1	ncRNA:22   UCAGGUAUAAAUUAUGAGAUUU   1   ||||=|||||||||||||||=| targets:1157   AGUCUAUAUUUAAUACUCUAGA   1178 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023126D22, full insert sequence	NA	coding protein	psRNATarget
AK100185.1	ncRNA:22   UCAGGUAUAAAUUAUGAGAUUU   1   ||||=||=|||||||||||||| targets:869   AGUCUAUGUUUAAUACUCUAAA   890 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J023031M16, full insert sequence	NA	coding protein	psRNATarget
JB164806.1	ncRNA:22   UCAGGUAUAAAUUAUGAGAUUU   1   ||||=||=|||||||||||||| targets:238   AGUCUAUGUUUAAUACUCUAAA   259 Target Full Sequence	2.0	Sequence 2470 from Patent EP2559767	NA	coding protein	psRNATarget
HI404345.1	ncRNA:22   UCAGGUAUAAAUUAUGAGAUUU   1   ||||=||=|||||||||||||| targets:238   AGUCUAUGUUUAAUACUCUAAA   259 Target Full Sequence	2.0	Sequence 2470 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236475.1	ncRNA:22   UCAGGUAUAAAUUAUGAGAUUU   1   ||||=||=|||||||||||||| targets:238   AGUCUAUGUUUAAUACUCUAAA   259 Target Full Sequence	2.0	Sequence 2470 from Patent EP2985353	NA	coding protein	psRNATarget
AK288576.1	ncRNA:22   UCAGGUAUAAAUUAUGAGAUUU   1   ||*|=||||||||||||||||| targets:1141   AGGCUAUAUUUAAUACUCUAAA   1162 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090049B14, full insert sequence	NA	coding protein	psRNATarget
AK288948.1	ncRNA:22   UCAGGUAUAAAUUAUGAGAUUU   1   |*||=||=|||||||||||||| targets:2793   AAUCUAUGUUUAAUACUCUAAA   2814 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090083I09, full insert sequence	NA	coding protein	psRNATarget
AK287827.1	ncRNA:22   UCAGGUAUAAAUUAUGAGAUUU   1   |||*=||=|||||||||||||| targets:2134   AGUGUAUGUUUAAUACUCUAAA   2155 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J065185G19, full insert sequence	NA	coding protein	psRNATarget
AK288241.1	ncRNA:22   UCAGGUAUAAAUUAUGAGAUUU   1   |||**||=|||||||||||||| targets:730   AGUGGAUGUUUAAUACUCUAAA   751 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090013L13, full insert sequence	NA	coding protein	psRNATarget
XM_015761890.1	ncRNA:22   UCAGGUAUAAAUUAUGAGAUUU   1   *|||||*|||||||||||||*| targets:59   UGUCCACAUUUAAUACUCUAUA   80 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4350929 (LOC4350929), transcript variant X1, mRNA	uncharacterized LOC4350929(LOC4350929)	coding protein	psRNATarget
XM_015761891.1	ncRNA:22   UCAGGUAUAAAUUAUGAGAUUU   1   *|||||*|||||||||||||*| targets:59   UGUCCACAUUUAAUACUCUAUA   80 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4350929 (LOC4350929), transcript variant X2, mRNA	uncharacterized LOC4350929(LOC4350929)	coding protein	psRNATarget
XM_015761894.1	ncRNA:22   UCAGGUAUAAAUUAUGAGAUUU   1   *|||||*|||||||||||||*| targets:59   UGUCCACAUUUAAUACUCUAUA   80 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4350929 (LOC4350929), transcript variant X5, mRNA	uncharacterized LOC4350929(LOC4350929)	coding protein	psRNATarget
XM_015761897.1	ncRNA:22   UCAGGUAUAAAUUAUGAGAUUU   1   *|||||*|||||||||||||*| targets:59   UGUCCACAUUUAAUACUCUAUA   80 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4350929 (LOC4350929), transcript variant X7, mRNA	uncharacterized LOC4350929(LOC4350929)	coding protein	psRNATarget