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BaseInfo

ncRNA ID novel_osa_miR2758
Species Oryza sativa
Class miRNA
Genome position Chr3:9162218-9162327 [-]
Reference genome IRGSP-1.0
Source SRR1849788
Length 22
Mature sequence(if miRNA) 1 - CUUAAAAAAUUCGUCUUGCAGU - 22
Stem-loop(if miRNA) --C UG        C       C    U     UA G     C   AA    UACA
   G  AGAUGAAU UUUUGAG CUAA UAGUC  U AUUAG UAU  GUGU    G
   |  |||||||| ||||||| |||| |||||  | ||||| |||  ||||    U
   C  UCUGCUUA AAAAUUC GAUU AUCAG  G UAAUC AUG  CACA    A
UGA GU        A       A    U     GC G     -   --    CCCA
Stem-loop sequence CGUGAGAUGAAUCUUUUGAGCCUAAUUAGUCUAUGAUUAGCUAUAAGUGUUACAGUAACCCACACGUACUAAUGGCGGACUAUUUAGACUUAAAAAAUUCGUCUUGCAGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK287827.1
ncRNA:22   UGACGUUCUGCUUAAAAAAUUC   1
  *||||=||||||||||||||||
targets:1990   UCUGCGAGACGAAUUUUUUAAG   2011

1.0 Oryza sativa Japonica Group cDNA, clone: J065185G19, full insert sequence NA coding protein psRNATarget
AK072161.1
ncRNA:22   UGACGUUCUGCUUAAAAAAUUC   1
  |||||=||||||||||*|||||
targets:1030   ACUGCGAGACGAAUUUAUUAAG   1051

2.5 Oryza sativa Japonica Group cDNA clone:J013132P06, full insert sequence NA coding protein psRNATarget
AK288948.1
ncRNA:22   UGACGUUCUGCUUAAAAAAUUC   1
  |||||=||||||||||*|||||
targets:443   ACUGCGAGACGAAUUUAUUAAG   464

2.5 Oryza sativa Japonica Group cDNA, clone: J090083I09, full insert sequence NA coding protein psRNATarget
AK288948.1
ncRNA:22   UGACGUUCUGCUUAAAAAAUUC   1
  |=|||=||||||||*|||||||
targets:2314   AUUGCGAGACGAAUAUUUUAAG   2335

2.5 Oryza sativa Japonica Group cDNA, clone: J090083I09, full insert sequence NA coding protein psRNATarget
AK120234.1
ncRNA:22   UGACGUUCUGCUUAAAAAAUUC   1
  |||||=||||||||||*|||||
targets:2421   ACUGCGAGACGAAUUUAUUAAG   2442

2.5 Oryza sativa Japonica Group cDNA clone:J013043L17, full insert sequence NA coding protein psRNATarget
AK288471.1
ncRNA:22   UGACGUUCUGCUUAAAAAAUUC   1
  |=||||||||||||*|||||||
targets:1684   AUUGCAAGACGAAUCUUUUAAG   1705

1.5 Oryza sativa Japonica Group cDNA, clone: J090037K14, full insert sequence NA coding protein psRNATarget
XM_015784558.1
ncRNA:22   UGACGUUCUGCUUAAAAAAUUC   1
  |||||=||||||||||*|||||
targets:4090   ACUGCGAGACGAAUUUAUUAAG   4111

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9270232 (LOC9270232), mRNA uncharacterized LOC9270232(LOC9270232) coding protein psRNATarget
AK288942.1
ncRNA:22   UGACGUUCUGCUUAAAAAAUUC   1
  |||||=||||||||||*|||||
targets:3285   ACUGCGAGACGAAUUUAUUAAG   3306

2.5 Oryza sativa Japonica Group cDNA, clone: J090083D07, full insert sequence NA coding protein psRNATarget
AK287702.1
ncRNA:22   UGACGUUCUGCUUAAAAAAUUC   1
  |||||=||||||||||*|||||
targets:1271   ACUGCGAGACGAAUUUAUUAAG   1292

2.5 Oryza sativa Japonica Group cDNA, clone: J065131D02, full insert sequence NA coding protein psRNATarget
XM_015781196.1
ncRNA:22   UGACGUUCUGCUUAAAAAAUUC   1
  *|||==||=|||||||||||||
targets:2066   UCUGUGAGGCGAAUUUUUUAAG   2087

3.0 PREDICTED: Oryza sativa Japonica Group GATA transcription factor 6 (LOC4336532), mRNA GATA transcription factor 6(LOC4336532) coding protein psRNATarget
CT828685.1
ncRNA:22   UGACGUUCUGCUUAAAAAAUUC   1
  |=|||=||||||||*|||||||
targets:799   AUUGCGAGACGAAUCUUUUAAG   820

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA124K24, full insert sequence NA coding protein psRNATarget
AK119775.1
ncRNA:22   UGACGUUCUGCUUAAAAAAUUC   1
  |=|||=||||||||*|||||||
targets:749   AUUGCGAGACGAAUCUUUUAAG   770

2.5 Oryza sativa Japonica Group cDNA clone:002-172-G07, full insert sequence NA coding protein psRNATarget
AK243163.1
ncRNA:22   UGACGUUCUGCUUAAAAAAUUC   1
  |=|||=||||||||*|||||||
targets:207   AUUGCGAGACGAAUCUUUUAAG   228

2.5 Oryza sativa Japonica Group cDNA, clone: J100034L01, full insert sequence NA coding protein psRNATarget
AK288820.1
ncRNA:22   UGACGUUCUGCUUAAAAAAUUC   1
  ||*||=|||||||||||||=||
targets:3017   ACCGCGAGACGAAUUUUUUGAG   3038

2.5 Oryza sativa Japonica Group cDNA, clone: J090073D04, full insert sequence NA coding protein psRNATarget
XM_015775745.1
ncRNA:22   UGACGUUCUGCUUAAAAAAUUC   1
  |=|||=||||||||*|||||||
targets:263   AUUGCGAGACGAAUCUUUUAAG   284

2.5 PREDICTED: Oryza sativa Japonica Group transcription factor BHLH148 (LOC4334060), mRNA transcription factor BHLH148(LOC4334060) coding protein psRNATarget
AK103177.1
ncRNA:22   UGACGUUCUGCUUAAAAAAUUC   1
  *|*||=||||||||||||||||
targets:1232   UCCGCGAGACGAAUUUUUUAAG   1253

1.0 Oryza sativa Japonica Group cDNA clone:J033121H17, full insert sequence NA coding protein psRNATarget
XM_015788312.1
ncRNA:22   UGACGUUCUGCUUAAAAAAUUC   1
  *|*||=||||||||||||||||
targets:1588   UCCGCGAGACGAAUUUUUUAAG   1609

1.0 PREDICTED: Oryza sativa Japonica Group serine/arginine-rich splicing factor SR45a (LOC4342102), transcript variant X1, mRNA serine/arginine-rich splicing factor SR45a(LOC4342102) coding protein psRNATarget
AK073850.1
ncRNA:22   UGACGUUCUGCUUAAAAAAUUC   1
  *|*||=||||||||||||||||
targets:1571   UCCGCGAGACGAAUUUUUUAAG   1592

1.0 Oryza sativa Japonica Group cDNA clone:J033073F11, full insert sequence NA coding protein psRNATarget
AK288241.1
ncRNA:22   UGACGUUCUGCUUAAAAAAUUC   1
  *|*||=||||||||||||||||
targets:586   UCCGCGAGACGAAUUUUUUAAG   607

1.0 Oryza sativa Japonica Group cDNA, clone: J090013L13, full insert sequence NA coding protein psRNATarget
AK288436.1
ncRNA:22   UGACGUUCUGCUUAAAAAAUUC   1
  *=||||||||||||*|||||||
targets:5405   UUUGCAAGACGAAUCUUUUAAG   5426

1.5 Oryza sativa Japonica Group cDNA, clone: J090033P03, full insert sequence NA coding protein psRNATarget
AK067512.1
ncRNA:22   UGACGUUCUGCUUAAAAAAUUC   1
  ||*|||||||||||||*|||||
targets:1102   ACCGCAAGACGAAUUUAUUAAG   1123

1.5 Oryza sativa Japonica Group cDNA clone:J013109G08, full insert sequence NA coding protein psRNATarget
AK288184.1
ncRNA:22   UGACGUUCUGCUUAAAAAAUUC   1
  *=|||=||||||||*|||||||
targets:868   UUUGCGAGACGAAUCUUUUAAG   889

2.5 Oryza sativa Japonica Group cDNA, clone: J090005P17, full insert sequence NA coding protein psRNATarget
AK288298.1
ncRNA:22   UGACGUUCUGCUUAAAAAAUUC   1
  *=|||=||||||||*|||||||
targets:1390   CUUGCGAGACGAAUCUUUUAAG   1411

2.5 Oryza sativa Japonica Group cDNA, clone: J090019N21, full insert sequence NA coding protein psRNATarget
CT837715.1
ncRNA:22   UGACGUUCUGCUUAAAAAAUUC   1
  ||*||=||||||||||*|||||
targets:1206   ACAGCGAGACGAAUUUAUUAAG   1227

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI232H20, full insert sequence NA coding protein psRNATarget
CT837714.1
ncRNA:22   UGACGUUCUGCUUAAAAAAUUC   1
  ||*||=||||||||||*|||||
targets:1798   ACAGCGAGACGAAUUUAUUAAG   1819

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI226D21, full insert sequence NA coding protein psRNATarget
AK072341.1
ncRNA:22   UGACGUUCUGCUUAAAAAAUUC   1
  ||*||=||||||||||*|||||
targets:2311   ACCGCGAGACGAAUUUAUUAAG   2332

2.5 Oryza sativa Japonica Group cDNA clone:J023052M08, full insert sequence NA coding protein psRNATarget
AK288995.1
ncRNA:22   UGACGUUCUGCUUAAAAAAUUC   1
  ||*||=||||||||||*|||||
targets:1329   ACCGCGAGACGAAUUUAUUAAG   1350

2.5 Oryza sativa Japonica Group cDNA, clone: J090088A20, full insert sequence NA coding protein psRNATarget
CT833754.1
ncRNA:22   UGACGUUCUGCUUAAAAAAUUC   1
  |=*||=||||||||*|||||||
targets:719   AUCGCGAGACGAAUCUUUUAAG   740

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI026E11, full insert sequence NA coding protein psRNATarget
AK288167.1
ncRNA:22   UGACGUUCUGCUUAAAAAAUUC   1
  |=*||=||||||||*|||||||
targets:1163   AUCGCGAGACGAAUCUUUUAAG   1184

2.5 Oryza sativa Japonica Group cDNA, clone: J090002K22, full insert sequence NA coding protein psRNATarget
AK288846.1
ncRNA:22   UGACGUUCUGCUUAAAAAAUUC   1
  *|*|==|||||||||||||||*
targets:126   UCCGUGAGACGAAUUUUUUAAA   147

3.0 Oryza sativa Japonica Group cDNA, clone: J090075E22, full insert sequence NA coding protein psRNATarget
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