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BaseInfo

ncRNA ID novel_osa_miR2754
Species Oryza sativa
Class miRNA
Genome position Chr4:22616930-22617025 [+]
Reference genome IRGSP-1.0
Source SRR1849787
Length 24
Mature sequence(if miRNA) 1 - CGAAUCUUUUGAACCUAAUUAAUC - 24
Stem-loop(if miRNA) --                     A  CG C     CA    U A    
  CGAAUCUUUUGAACCUAAUUA UC  U AUUAG  CAUG G GUUAU
  ||||||||||||||||||||| ||  | |||||  |||| | ||||U
  GCUUAGAAAACUUGGAUUAAU AG  A UAAUC  GUAU C CGAUA
CU                     C  AU C     -A    C A    
Stem-loop sequence CGAAUCUUUUGAACCUAAUUAAUCCGUCAUUAGCACAUGUGAGUUAUUAUAGCACCUAUGACUAAUCAUAGACUAAUUAGGUUCAAAAGAUUCGUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK121199.1
ncRNA:24   CUAAUUAAUCCAAGUUUUCUAAGC   1
  |||||||||||*||||||||||||
targets:1460   GAUUAAUUAGGCUCAAAAGAUUCG   1483

1.5 Oryza sativa Japonica Group cDNA clone:J023087G06, full insert sequence NA coding protein psRNATarget
AK288244.1
ncRNA:24   CUAAUUAAUCCAAGUUUUCUAAGC   1
  |||||||||||*|||||||||||*
targets:1683   GAUUAAUUAGGCUCAAAAGAUUCA   1706

2.5 Oryza sativa Japonica Group cDNA, clone: J090014C01, full insert sequence NA coding protein psRNATarget
AK064090.1
ncRNA:24   CUAAUUAAUCCAAGUUUUCUAAGC   1
  ||||||||||**||||||||||||
targets:1332   GAUUAAUUAGUCUCAAAAGAUUCG   1355

2.5 Oryza sativa Japonica Group cDNA clone:002-100-D06, full insert sequence NA coding protein psRNATarget
XM_015769938.1
ncRNA:24   CUAAUUAAUCCAAGUUUUCUAAGC   1
  |**||||||||||=||||||||||
targets:1976   GUGUAAUUAGGUUUAAAAGAUUCG   1999

1.5 PREDICTED: Oryza sativa Japonica Group OTU domain-containing protein 5-A (LOC4331162), transcript variant X2, mRNA OTU domain-containing protein 5-A(LOC4331162) coding protein psRNATarget
XM_015769937.1
ncRNA:24   CUAAUUAAUCCAAGUUUUCUAAGC   1
  |**||||||||||=||||||||||
targets:2069   GUGUAAUUAGGUUUAAAAGAUUCG   2092

1.5 PREDICTED: Oryza sativa Japonica Group OTU domain-containing protein 5-A (LOC4331162), transcript variant X1, mRNA OTU domain-containing protein 5-A(LOC4331162) coding protein psRNATarget
AK103318.1
ncRNA:24   CUAAUUAAUCCAAGUUUUCUAAGC   1
  ||*||||||||*||||||||||||
targets:1147   GACUAAUUAGGCUCAAAAGAUUCG   1170

1.5 Oryza sativa Japonica Group cDNA clone:J033125I08, full insert sequence NA coding protein psRNATarget
AK119352.1
ncRNA:24   CUAAUUAAUCCAAGUUUUCUAAGC   1
  |**||||||||||=||||||||||
targets:2063   GUGUAAUUAGGUUUAAAAGAUUCG   2086

1.5 Oryza sativa Japonica Group cDNA clone:001-131-F04, full insert sequence NA coding protein psRNATarget
AK121113.1
ncRNA:24   CUAAUUAAUCCAAGUUUUCUAAGC   1
  ||*||||||||*||||||||||||
targets:2699   GACUAAUUAGGCUCAAAAGAUUCG   2722

1.5 Oryza sativa Japonica Group cDNA clone:J023073I18, full insert sequence NA coding protein psRNATarget
AK067512.1
ncRNA:24   CUAAUUAAUCCAAGUUUUCUAAGC   1
  ||*||||||||*||||||||||||
targets:1181   GACUAAUUAGGCUCAAAAGAUUCG   1204

1.5 Oryza sativa Japonica Group cDNA clone:J013109G08, full insert sequence NA coding protein psRNATarget
AK241322.1
ncRNA:24   CUAAUUAAUCCAAGUUUUCUAAGC   1
  ||*||||||||*|||||||||||*
targets:2134   GACUAAUUAGGCUCAAAAGAUUCA   2157

2.5 Oryza sativa Japonica Group cDNA, clone: J065142K05, full insert sequence NA coding protein psRNATarget
XM_015757506.1
ncRNA:24   CUAAUUAAUCCAAGUUUUCUAAGC   1
  ||*||||||||*|||||||||||*
targets:2127   GACUAAUUAGGCUCAAAAGAUUCA   2150

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9268466 (LOC9268466), transcript variant X1, mRNA uncharacterized LOC9268466(LOC9268466) coding protein psRNATarget
AK288948.1
ncRNA:24   CUAAUUAAUCCAAGUUUUCUAAGC   1
  ***||||||||*||||||||||||
targets:521   ACGUAAUUAGGCUCAAAAGAUUCG   544

1.5 Oryza sativa Japonica Group cDNA, clone: J090083I09, full insert sequence NA coding protein psRNATarget
XM_015775081.1
ncRNA:24   CUAAUUAAUCCAAGUUUUCUAAGC   1
  |**||||||||*||||||||||||
targets:1112   GCGUAAUUAGGCUCAAAAGAUUCG   1135

1.5 PREDICTED: Oryza sativa Japonica Group methylesterase 3 (LOC4324570), mRNA methylesterase 3(LOC4324570) coding protein psRNATarget
AK101996.1
ncRNA:24   CUAAUUAAUCCAAGUUUUCUAAGC   1
  |**||||||||*||||||||||||
targets:1691   GCAUAAUUAGGCUCAAAAGAUUCG   1714

1.5 Oryza sativa Japonica Group cDNA clone:J033079J12, full insert sequence NA coding protein psRNATarget
XM_015772097.1
ncRNA:24   CUAAUUAAUCCAAGUUUUCUAAGC   1
  ***||||||||*||||||||||||
targets:1909   ACGUAAUUAGGCUCAAAAGAUUCG   1932

1.5 PREDICTED: Oryza sativa Japonica Group cinnamate beta-D-glucosyltransferase (LOC4328553), mRNA cinnamate beta-D-glucosyltransferase(LOC4328553) coding protein psRNATarget
AK287930.1
ncRNA:24   CUAAUUAAUCCAAGUUUUCUAAGC   1
  |**||||||||*||||||||||||
targets:2450   GCAUAAUUAGGCUCAAAAGAUUCG   2473

1.5 Oryza sativa Japonica Group cDNA, clone: J065218P20, full insert sequence NA coding protein psRNATarget
XM_015769710.1
ncRNA:24   CUAAUUAAUCCAAGUUUUCUAAGC   1
  ***||||||||*||||||||||||
targets:2930   ACGUAAUUAGGCUCAAAAGAUUCG   2953

1.5 PREDICTED: Oryza sativa Japonica Group disease resistance protein RPP13 (LOC4328990), transcript variant X2, mRNA disease resistance protein RPP13(LOC4328990) coding protein psRNATarget
XM_015769709.1
ncRNA:24   CUAAUUAAUCCAAGUUUUCUAAGC   1
  ***||||||||*||||||||||||
targets:3064   ACGUAAUUAGGCUCAAAAGAUUCG   3087

1.5 PREDICTED: Oryza sativa Japonica Group disease resistance protein RPP13 (LOC4328990), transcript variant X1, mRNA disease resistance protein RPP13(LOC4328990) coding protein psRNATarget
AK068143.1
ncRNA:24   CUAAUUAAUCCAAGUUUUCUAAGC   1
  |**|||||||*|||||||||||=|
targets:1223   GCAUAAUUAGAUUCAAAAGAUUUG   1246

2.5 Oryza sativa Japonica Group cDNA clone:J013134C06, full insert sequence NA coding protein psRNATarget
XM_015761412.1
ncRNA:24   CUAAUUAAUCCAAGUUUUCUAAGC   1
  ||*|*||||||*||||||||||||
targets:625   GACUCAUUAGGCUCAAAAGAUUCG   648

1.5 PREDICTED: Oryza sativa Japonica Group nucleobase-ascorbate transporter 2 (LOC4325616), mRNA nucleobase-ascorbate transporter 2(LOC4325616) coding protein psRNATarget
AK288305.1
ncRNA:24   CUAAUUAAUCCAAGUUUUCUAAGC   1
  ||**|||||||*||||||||||||
targets:541   GAGCAAUUAGGCUCAAAAGAUUCG   564

1.5 Oryza sativa Japonica Group cDNA, clone: J090020F20, full insert sequence NA coding protein psRNATarget
AK070572.1
ncRNA:24   CUAAUUAAUCCAAGUUUUCUAAGC   1
  |***|||||||*||||||||||||
targets:2207   GCGCAAUUAGGCUCAAAAGAUUCG   2230

1.5 Oryza sativa Japonica Group cDNA clone:J023055P17, full insert sequence NA coding protein psRNATarget
AK120219.1
ncRNA:24   CUAAUUAAUCCAAGUUUUCUAAGC   1
  |**||||||||*|||||||||||*
targets:604   GCGUAAUUAGGCUCAAAAGAUUCA   627

2.5 Oryza sativa Japonica Group cDNA clone:J013041B17, full insert sequence NA coding protein psRNATarget
AK120234.1
ncRNA:24   CUAAUUAAUCCAAGUUUUCUAAGC   1
  |***|||||||*||||||||||||
targets:2499   GCGCAAUUAGGCUCAAAAGAUUCG   2522

1.5 Oryza sativa Japonica Group cDNA clone:J013043L17, full insert sequence NA coding protein psRNATarget
JB164388.1
ncRNA:24   CUAAUUAAUCCAAGUUUUCUAAGC   1
  |**|||||||**||||||||||||
targets:83   GCGUAAUUAGCCUCAAAAGAUUCG   106

2.5 Sequence 2052 from Patent EP2559767 NA coding protein psRNATarget
HI404503.1
ncRNA:24   CUAAUUAAUCCAAGUUUUCUAAGC   1
  |**|||||||**||||||||||||
targets:83   GCAUAAUUAGCCUCAAAAGAUUCG   106

2.5 Sequence 2628 from Patent EP2074227 NA coding protein psRNATarget
LQ236633.1
ncRNA:24   CUAAUUAAUCCAAGUUUUCUAAGC   1
  |**|||||||**||||||||||||
targets:83   GCAUAAUUAGCCUCAAAAGAUUCG   106

2.5 Sequence 2628 from Patent EP2985353 NA coding protein psRNATarget
HI403927.1
ncRNA:24   CUAAUUAAUCCAAGUUUUCUAAGC   1
  |**|||||||**||||||||||||
targets:83   GCGUAAUUAGCCUCAAAAGAUUCG   106

2.5 Sequence 2052 from Patent EP2074227 NA coding protein psRNATarget
LQ236057.1
ncRNA:24   CUAAUUAAUCCAAGUUUUCUAAGC   1
  |**|||||||**||||||||||||
targets:83   GCGUAAUUAGCCUCAAAAGAUUCG   106

2.5 Sequence 2052 from Patent EP2985353 NA coding protein psRNATarget
JB164964.1
ncRNA:24   CUAAUUAAUCCAAGUUUUCUAAGC   1
  |**|||||||**||||||||||||
targets:83   GCAUAAUUAGCCUCAAAAGAUUCG   106

2.5 Sequence 2628 from Patent EP2559767 NA coding protein psRNATarget
AK103177.1
ncRNA:24   CUAAUUAAUCCAAGUUUUCUAAGC   1
  |**|||||||**||||||||||||
targets:1311   GCGUAAUUAGACUCAAAAGAUUCG   1334

2.5 Oryza sativa Japonica Group cDNA clone:J033121H17, full insert sequence NA coding protein psRNATarget
XM_015788312.1
ncRNA:24   CUAAUUAAUCCAAGUUUUCUAAGC   1
  |**|||||||**||||||||||||
targets:1667   GCGUAAUUAGACUCAAAAGAUUCG   1690

2.5 PREDICTED: Oryza sativa Japonica Group serine/arginine-rich splicing factor SR45a (LOC4342102), transcript variant X1, mRNA serine/arginine-rich splicing factor SR45a(LOC4342102) coding protein psRNATarget
AK287827.1
ncRNA:24   CUAAUUAAUCCAAGUUUUCUAAGC   1
  |**|||||||**||||||||||||
targets:2068   GCGUAAUUAGACUCAAAAGAUUCG   2091

2.5 Oryza sativa Japonica Group cDNA, clone: J065185G19, full insert sequence NA coding protein psRNATarget
AK073850.1
ncRNA:24   CUAAUUAAUCCAAGUUUUCUAAGC   1
  |**|||||||**||||||||||||
targets:1650   GCGUAAUUAGACUCAAAAGAUUCG   1673

2.5 Oryza sativa Japonica Group cDNA clone:J033073F11, full insert sequence NA coding protein psRNATarget
AK102878.1
ncRNA:24   CUAAUUAAUCCAAGUUUUCUAAGC   1
  ***|||||||**||||||||||||
targets:2124   ACGUAAUUAGACUCAAAAGAUUCG   2147

2.5 Oryza sativa Japonica Group cDNA clone:J033112G02, full insert sequence NA coding protein psRNATarget
XM_015785585.1
ncRNA:24   CUAAUUAAUCCAAGUUUUCUAAGC   1
  ***|||||||**||||||||||||
targets:2195   ACGUAAUUAGACUCAAAAGAUUCG   2218

2.5 PREDICTED: Oryza sativa Japonica Group external alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial (LOC4341876), transcript variant X2, mRNA external alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial(LOC4341876) coding protein psRNATarget
XM_015785584.1
ncRNA:24   CUAAUUAAUCCAAGUUUUCUAAGC   1
  ***|||||||**||||||||||||
targets:2328   ACGUAAUUAGACUCAAAAGAUUCG   2351

2.5 PREDICTED: Oryza sativa Japonica Group external alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial (LOC4341876), transcript variant X1, mRNA external alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial(LOC4341876) coding protein psRNATarget
AK065982.1
ncRNA:24   CUAAUUAAUCCAAGUUUUCUAAGC   1
  |**|||||||**||||||||||||
targets:2867   GCGUAAUUAGACUCAAAAGAUUCG   2890

2.5 Oryza sativa Japonica Group cDNA clone:J013045J05, full insert sequence NA coding protein psRNATarget
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