Search result

BaseInfo

ncRNA ID	novel_osa_miR2751
Species	Oryza sativa
Class	miRNA
Genome position	Chr10:8526449-8526497 [+]
Reference genome	IRGSP-1.0
Source	SRR1849787
Length	24
Mature sequence(if miRNA)	26 - CAUGUCCAGAUUCGUAGUACUAGG - 49
Stem-loop(if miRNA)	--               A    GG   UAGUACUAUGAAUCU GACA  A   ||||||||||||||| ||||  G   AUCAUGAUGCUUAGA CUGU  G GG               C    AC
Stem-loop sequence	UAGUACUAUGAAUCUAGACAGGAGGCAUGUCCAGAUUCGUAGUACUAGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015761638.1	ncRNA:24   GGAUCAUGAUGCUUAGACCUGUAC   1   |||||||||||||||||*|||||| targets:3912   CCUAGUACUACGAAUCUAGACAUG   3935 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group putative receptor protein kinase ZmPK1 (LOC107278048), mRNA	putative receptor protein kinase ZmPK1(LOC107278048)	coding protein	psRNATarget
AK107672.1	ncRNA:24   GGAUCAUGAUGCUUAGACCUGUAC   1   ||||||||||||||||||||||** targets:880   CCUAGUACUACGAAUCUGGACAGA   903 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-131-H10, full insert sequence	NA	coding protein	psRNATarget
AK288631.1	ncRNA:24   GGAUCAUGAUGCUUAGACCUGUAC   1   =|||||||||||||||||||=||* targets:4126   UCUAGUACUACGAAUCUGGAUAUA   4149 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090055C12, full insert sequence	NA	coding protein	psRNATarget
AK063369.1	ncRNA:24   GGAUCAUGAUGCUUAGACCUGUAC   1   |||||||||||*|||||||||||* targets:989   CCUAGUACUACAAAUCUGGACAUU   1012 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-114-E01, full insert sequence	NA	coding protein	psRNATarget
XM_015794212.1	ncRNA:24   GGAUCAUGAUGCUUAGACCUGUAC   1   |||||||||||*|||||||||||* targets:1100   CCUAGUACUACAAAUCUGGACAUU   1123 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4325579 (LOC4325579), mRNA	uncharacterized LOC4325579(LOC4325579)	coding protein	psRNATarget
AK064924.1	ncRNA:24   GGAUCAUGAUGCUUAGACCUGUAC   1   |=||*|||||||||||||||=||| targets:2017   CUUAAUACUACGAAUCUGGAUAUG   2040 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013000N15, full insert sequence	NA	coding protein	psRNATarget
AK119748.1	ncRNA:24   GGAUCAUGAUGCUUAGACCUGUAC   1   |=||*|||||||||||||||=||| targets:2194   CUUAAUACUACGAAUCUGGAUAUG   2217 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-165-F11, full insert sequence	NA	coding protein	psRNATarget
XM_015785327.1	ncRNA:24   GGAUCAUGAUGCUUAGACCUGUAC   1   |=||*|||||||||||||||=||| targets:2250   CUUAAUACUACGAAUCUGGAUAUG   2273 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group phosphoinositide phospholipase C 2 (LOC4337686), mRNA	phosphoinositide phospholipase C 2(LOC4337686)	coding protein	psRNATarget
AK072141.1	ncRNA:24   GGAUCAUGAUGCUUAGACCUGUAC   1   |=||*|||||||||||||||=||| targets:2817   CUUAAUACUACGAAUCUGGAUAUG   2840 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013122I07, full insert sequence	NA	coding protein	psRNATarget
AK241555.1	ncRNA:24   GGAUCAUGAUGCUUAGACCUGUAC   1   ==||||||||||||||||||||** targets:157   UUUAGUACUACGAAUCUGGACAGA   180 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065178B07, full insert sequence	NA	coding protein	psRNATarget
CT829763.1	ncRNA:24   GGAUCAUGAUGCUUAGACCUGUAC   1   =|||*||||||||||||||||||* targets:976   UCUAAUACUACGAAUCUGGACAUA   999 Target Full Sequence	1.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA105M10, full insert sequence	NA	coding protein	psRNATarget
AK288866.1	ncRNA:24   GGAUCAUGAUGCUUAGACCUGUAC   1   |=|||||*|||||||||||||||* targets:1903   CUUAGUAGUACGAAUCUGGACAUA   1926 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090078B06, full insert sequence	NA	coding protein	psRNATarget
CT833051.1	ncRNA:24   GGAUCAUGAUGCUUAGACCUGUAC   1   |=||*|||||=|||||||||=||| targets:606   CUUAAUACUAUGAAUCUGGAUAUG   629 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN042I02, full insert sequence	NA	coding protein	psRNATarget
JB164009.1	ncRNA:24   GGAUCAUGAUGCUUAGACCUGUAC   1   ||||*|||||||||||||||||** targets:154   CCUAAUACUACGAAUCUGGACAGA   177 Target Full Sequence	2.5	Sequence 1673 from Patent EP2559767	NA	coding protein	psRNATarget
HI403548.1	ncRNA:24   GGAUCAUGAUGCUUAGACCUGUAC   1   ||||*|||||||||||||||||** targets:154   CCUAAUACUACGAAUCUGGACAGA   177 Target Full Sequence	2.5	Sequence 1673 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235678.1	ncRNA:24   GGAUCAUGAUGCUUAGACCUGUAC   1   ||||*|||||||||||||||||** targets:154   CCUAAUACUACGAAUCUGGACAGA   177 Target Full Sequence	2.5	Sequence 1673 from Patent EP2985353	NA	coding protein	psRNATarget
AK288418.1	ncRNA:24   GGAUCAUGAUGCUUAGACCUGUAC   1   ||||*|||||||||||||||||** targets:889   CCUAAUACUACGAAUCUGGACAGA   912 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090031L18, full insert sequence	NA	coding protein	psRNATarget
XM_015770952.1	ncRNA:24   GGAUCAUGAUGCUUAGACCUGUAC   1   |=|||*|||||||||||*|||||| targets:1339   CUUAGAACUACGAAUCUAGACAUG   1362 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group putative phosphatidylinositol N-acetylglucosaminyltransferase subunit C (LOC4330019), mRNA	putative phosphatidylinositol N-acetylglucosaminyltransferase subunit C(LOC4330019)	coding protein	psRNATarget
AK068288.1	ncRNA:24   GGAUCAUGAUGCUUAGACCUGUAC   1   ||||*|||*|=||||||||||||| targets:1600   CCUAUUACAAUGAAUCUGGACAUG   1623 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J013149P03, full insert sequence	NA	coding protein	psRNATarget
XM_015790948.1	ncRNA:24   GGAUCAUGAUGCUUAGACCUGUAC   1   ||||*|||*|=||||||||||||| targets:1624   CCUAUUACAAUGAAUCUGGACAUG   1647 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group ubiquinol-cytochrome-c reductase complex assembly factor 1 (LOC9268152), mRNA	ubiquinol-cytochrome-c reductase complex assembly factor 1(LOC9268152)	coding protein	psRNATarget
AK067512.1	ncRNA:24   GGAUCAUGAUGCUUAGACCUGUAC   1   =*|||||||==||||||||||||* targets:3622   UAUAGUACUGUGAAUCUGGACAUA   3645 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J013109G08, full insert sequence	NA	coding protein	psRNATarget
AK288796.1	ncRNA:24   GGAUCAUGAUGCUUAGACCUGUAC   1   *=|||||||||||||||*|||||* targets:563   GUUAGUACUACGAAUCUAGACAUA   586 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090070F05, full insert sequence	NA	coding protein	psRNATarget
JB164563.1	ncRNA:24   GGAUCAUGAUGCUUAGACCUGUAC   1   |*|||||=*=|||||||||||||| targets:50   CAUAGUAUAGCGAAUCUGGACAUG   73 Target Full Sequence	3.0	Sequence 2227 from Patent EP2559767	NA	coding protein	psRNATarget
HI404102.1	ncRNA:24   GGAUCAUGAUGCUUAGACCUGUAC   1   |*|||||=*=|||||||||||||| targets:50   CAUAGUAUAGCGAAUCUGGACAUG   73 Target Full Sequence	3.0	Sequence 2227 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236232.1	ncRNA:24   GGAUCAUGAUGCUUAGACCUGUAC   1   |*|||||=*=|||||||||||||| targets:50   CAUAGUAUAGCGAAUCUGGACAUG   73 Target Full Sequence	3.0	Sequence 2227 from Patent EP2985353	NA	coding protein	psRNATarget
XM_015782022.1	ncRNA:24   GGAUCAUGAUGCUUAGACCUGUAC   1   ||*|||||*|=||||||||||||* targets:1318   CCAAGUACAAUGAAUCUGGACAUA   1341 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group zinc transporter 9 (LOC4339080), transcript variant X1, mRNA	zinc transporter 9(LOC4339080)	coding protein	psRNATarget
XM_015782023.1	ncRNA:24   GGAUCAUGAUGCUUAGACCUGUAC   1   ||*|||||*|=||||||||||||* targets:2360   CCAAGUACAAUGAAUCUGGACAUA   2383 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group zinc transporter 9 (LOC4339080), transcript variant X2, mRNA	zinc transporter 9(LOC4339080)	coding protein	psRNATarget
AK288602.1	ncRNA:24   GGAUCAUGAUGCUUAGACCUGUAC   1   =|||*|||*||||||||||||||* targets:780   UCUAAUACAACGAAUCUGGACAUA   803 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090052H23, full insert sequence	NA	coding protein	psRNATarget
JB164318.1	ncRNA:24   GGAUCAUGAUGCUUAGACCUGUAC   1   |*|||||*||||||||||||||*| targets:61   CAUAGUAAUACGAAUCUGGACAGG   84 Target Full Sequence	2.5	Sequence 1982 from Patent EP2559767	NA	coding protein	psRNATarget
HI403857.1	ncRNA:24   GGAUCAUGAUGCUUAGACCUGUAC   1   |*|||||*||||||||||||||*| targets:61   CAUAGUAAUACGAAUCUGGACAGG   84 Target Full Sequence	2.5	Sequence 1982 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235987.1	ncRNA:24   GGAUCAUGAUGCUUAGACCUGUAC   1   |*|||||*||||||||||||||*| targets:61   CAUAGUAAUACGAAUCUGGACAGG   84 Target Full Sequence	2.5	Sequence 1982 from Patent EP2985353	NA	coding protein	psRNATarget
XM_015795728.1	ncRNA:24   GGAUCAUGAUGCUUAGACCUGUAC   1   |=|--||||==||||||||||||| targets:1131   CUU--UACUGUGAAUCUGGACAUG   1152 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4347738 (LOC4347738), transcript variant X1, mRNA	uncharacterized LOC4347738(LOC4347738)	coding protein	psRNATarget
AK288305.1	ncRNA:24   GGAUCAUGAUGCUUAGACCUGUAC   1   ||||**|=*||||||||||||||| targets:4303   CCUAUGAUAACGAAUCUGGACAUG   4326 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090020F20, full insert sequence	NA	coding protein	psRNATarget