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BaseInfo

ncRNA ID	novel_osa_miR2749
Species	Oryza sativa
Class	miRNA
Genome position	Chr8:3132545-3132711 [+]
Reference genome	IRGSP-1.0
Source	SRR1849787
Length	24
Mature sequence(if miRNA)	144 - AAUAGUCAAACGUUGGUCAAAAAG - 167
Stem-loop(if miRNA)	--    AU            CG     C         AAA   A     U   -CAUU     -C  UG  A     --UU   CA   UUUU  CUAACGUUUGAC  UUCGU UUAUUCAAA   UUU UGUAA UAU     UAUUU  GU  UG CUUAA    CAU  U   ||||  ||||||||||||  ||||| |||||||||   ||| ||||| |||     |||||  ||  || |||||    |||   AAAA  GGUUGCAAACUG  AAGCA AAUAAGUUU   AAA ACGUU AUA     AUAAA  CA  AC GAAUU    GUA  C GA    CU            AU     A         AAA   C     U   CUUUU     UA  GU  -     UUUU   AA
Stem-loop sequence	UUUUAUCUAACGUUUGACCGUUCGUCUUAUUCAAAAAAUUUAUGUAAUUAUCAUUUAUUUCGUUGUGACUUAAUUCAUCAUCAAAUGUUUUUUAAGCAUGACAUAAAUAUUUUCAUAUUUGCACAAAAAAUUUGAAUAAAACGAAUAGUCAAACGUUGGUCAAAAAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015779878.1	ncRNA:24   GAAAAACUGGUUGCAAACUGAUAA   1   ||||||||||||||||||||*||| targets:193   CUUUUUGACCAACGUUUGACCAUU   216 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group AT-hook motif nuclear-localized protein 9 (LOC4337449), mRNA	AT-hook motif nuclear-localized protein 9(LOC4337449)	coding protein	psRNATarget
AK288290.1	ncRNA:24   GAAAAACUGGUUGCAAACUGAUAA   1   |||||*||||||||||||||*||| targets:1609   CUUUUCGACCAACGUUUGACCAUU   1632 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090019D06, full insert sequence	NA	coding protein	psRNATarget
CT829159.1	ncRNA:24   GAAAAACUGGUUGCAAACUGAUAA   1   |||||||*||||||||||||*||| targets:882   CUUUUUGUCCAACGUUUGACCAUU   905 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN009P22, full insert sequence	NA	coding protein	psRNATarget
AK103228.1	ncRNA:24   GAAAAACUGGUUGCAAACUGAUAA   1   =||||||*||||||||||||*||| targets:2643   UUUUUUGUCCAACGUUUGACCAUU   2666 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033123C21, full insert sequence	NA	coding protein	psRNATarget
AK100631.1	ncRNA:24   GAAAAACUG-GUUGCAAACUGAUAA   1   **||||*||-||||||||||||||| targets:187   ACUUUUCACACAACGUUUGACUAUU   211 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J023109E08, full insert sequence	NA	coding protein	psRNATarget