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BaseInfo

ncRNA ID	novel_osa_miR2748
Species	Oryza sativa
Class	miRNA
Genome position	Chr3:10911241-10911402 [+]
Reference genome	IRGSP-1.0
Source	SRR1849786
Length	19
Mature sequence(if miRNA)	144 - GAUCAAACGUUGGUUAAAA - 162
Stem-loop(if miRNA)	--     A         C U  UG       -AAAAAAA        -UUAUCAUU     -UA UG  A     UUUAU      UUAAC AACGUUUGA C UU  UCUUAUU        UUAUGUAA         UAUUU   U  UG CUUGA     CAUC   ||||| ||||||||| | ||  |||||||        ||||||||         |||||   |  || |||||     |||A   AAUUG UUGCAAACU G AA  AGAAUAA        AAUACGUU         AUGAA   A  AC GAAUU     GUAA AA     G         A U  GU       GUUAAAAA        UACGUUUUU     UAC GU  -     -UCUU
Stem-loop sequence	UUAACAAACGUUUGACCUUUUGUCUUAUUAAAAAAAUUAUGUAAUUAUCAUUUAUUUUAUUGUGACUUGAUUUAUCAUCAAAUGUUCUUUAAGCAUGACAUAAGUAUUUUUGCAUUUGCAUAAAAAAAUUGAAUAAGAUGAAUGAUCAAACGUUGGUUAAAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK066289.1	ncRNA:19   AAAAUUGGUUGCAAACUAG   1   |||||||||||||||||*| targets:1279   UUUUAACCAACGUUUGACC   1297 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013063M01, full insert sequence	NA	coding protein	psRNATarget
XM_015778582.1	ncRNA:19   AAAAUUGGUUGCAAACUAG   1   |||||||||||||||||*| targets:1277   UUUUAACCAACGUUUGACC   1295 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group methionine aminopeptidase 1B, chloroplastic (LOC4336948), mRNA	methionine aminopeptidase 1B, chloroplastic(LOC4336948)	coding protein	psRNATarget
AK062758.1	ncRNA:19   AAAAUUGGUUGCAAACUAG   1   |||||||||||||||||*| targets:518   UUUUAACCAACGUUUGACC   536 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:001-106-G10, full insert sequence	NA	coding protein	psRNATarget
XM_015779878.1	ncRNA:19   AAAAUUGGUUGCAAACUAG   1   ||||=||||||||||||*| targets:195   UUUUGACCAACGUUUGACC   213 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group AT-hook motif nuclear-localized protein 9 (LOC4337449), mRNA	AT-hook motif nuclear-localized protein 9(LOC4337449)	coding protein	psRNATarget
AK287966.1	ncRNA:19   AAAAUUGGUUGCAAACUAG   1   *|*|||||||||||||||| targets:106   AUGUAACCAACGUUUGAUC   124 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J075067H10, full insert sequence	NA	coding protein	psRNATarget
XM_015781389.1	ncRNA:19   AAAAUUGGUUGCAAACUAG   1   |||||*|||||||||||*| targets:1298   UUUUAUCCAACGUUUGACC   1316 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4336685 (LOC4336685), transcript variant X1, mRNA	uncharacterized LOC4336685(LOC4336685)	coding protein	psRNATarget
XM_015781390.1	ncRNA:19   AAAAUUGGUUGCAAACUAG   1   |||||*|||||||||||*| targets:1298   UUUUAUCCAACGUUUGACC   1316 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4336685 (LOC4336685), transcript variant X2, mRNA	uncharacterized LOC4336685(LOC4336685)	coding protein	psRNATarget