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BaseInfo

ncRNA ID	novel_osa_miR2746
Species	Oryza sativa
Class	miRNA
Genome position	Chr2:14869055-14869118 [+]
Reference genome	IRGSP-1.0
Source	SRR1849786
Length	23
Mature sequence(if miRNA)	1 - ACAUAUCCUAGUACUAUGAAUCU - 23
Stem-loop(if miRNA)	--AC    C       U             UA     AUAU CUAGUAC AUGAAUCUGGAUA  C     |||| ||||||| |||||||||||||     UAUA GAUCAUG UACUUAGACCUGU  C ACUA    A       U             CU
Stem-loop sequence	ACAUAUCCUAGUACUAUGAAUCUGGAUAUACCUCUGUCCAGAUUCAUUGUACUAGAAUAUAUCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK119339.1	ncRNA:23   UCUAAGUAUCAUGAUCCUAUACA   1   |||||||||||||||||||=||| targets:343   AGAUUCAUAGUACUAGGAUGUGU   365 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:001-131-D05, full insert sequence	NA	coding protein	psRNATarget
AK107609.1	ncRNA:23   UCUAAGUAUCAUGAUCCUAUACA   1   ||||||=|=|||||||||||||| targets:1476   AGAUUCGUGGUACUAGGAUAUGU   1498 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:002-131-C04, full insert sequence	NA	coding protein	psRNATarget
AK243489.1	ncRNA:23   UCUAAGUAUCAUGAUCCUAUACA   1   |||||=||||||=|||||||||| targets:2551   AGAUUUAUAGUAUUAGGAUAUGU   2573 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J100073M12, full insert sequence	NA	coding protein	psRNATarget
AK071898.1	ncRNA:23   UCUAAGUAUCAUGAUCCUAUACA   1   ||||||=||||||||||||=||| targets:2721   AGAUUCGUAGUACUAGGAUGUGU   2743 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013059B05, full insert sequence	NA	coding protein	psRNATarget
XM_015764610.1	ncRNA:23   UCUAAGUAUCAUGAUCCUAUACA   1   ||||||=||||||||||||=||| targets:2737   AGAUUCGUAGUACUAGGAUGUGU   2759 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group BTB/POZ domain-containing protein NPY4 (LOC4352652), mRNA	BTB/POZ domain-containing protein NPY4(LOC4352652)	coding protein	psRNATarget
XM_015767398.1	ncRNA:23   UCUAAGUAUCAUGAUCCUAUACA   1   ||||||=||||||||||||=||| targets:3802   AGAUUCGUAGUACUAGGAUGUGU   3824 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At4g21300 (LOC9271215), transcript variant X5, mRNA	pentatricopeptide repeat-containing protein At4g21300(LOC9271215)	coding protein	psRNATarget
XM_015767397.1	ncRNA:23   UCUAAGUAUCAUGAUCCUAUACA   1   ||||||=||||||||||||=||| targets:3805   AGAUUCGUAGUACUAGGAUGUGU   3827 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At4g21300 (LOC9271215), transcript variant X4, mRNA	pentatricopeptide repeat-containing protein At4g21300(LOC9271215)	coding protein	psRNATarget
XM_015767396.1	ncRNA:23   UCUAAGUAUCAUGAUCCUAUACA   1   ||||||=||||||||||||=||| targets:3950   AGAUUCGUAGUACUAGGAUGUGU   3972 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At4g21300 (LOC9271215), transcript variant X3, mRNA	pentatricopeptide repeat-containing protein At4g21300(LOC9271215)	coding protein	psRNATarget
JB165005.1	ncRNA:23   UCUAAGUAUCAUGAUCCUAUACA   1   ||||||||||||||||*|||||| targets:46   AGAUUCAUAGUACUAGAAUAUGU   68 Target Full Sequence	1.5	Sequence 2669 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236674.1	ncRNA:23   UCUAAGUAUCAUGAUCCUAUACA   1   ||||||||||||||||*|||||| targets:46   AGAUUCAUAGUACUAGAAUAUGU   68 Target Full Sequence	1.5	Sequence 2669 from Patent EP2985353	NA	coding protein	psRNATarget
HI404544.1	ncRNA:23   UCUAAGUAUCAUGAUCCUAUACA   1   ||||||||||||||||*|||||| targets:46   AGAUUCAUAGUACUAGAAUAUGU   68 Target Full Sequence	1.5	Sequence 2669 from Patent EP2074227	NA	coding protein	psRNATarget
JB164562.1	ncRNA:23   UCUAAGUAUCAUGAUCCUAUACA   1   |||||||||*||||||||||||| targets:59   AGAUUCAUAAUACUAGGAUAUGU   81 Target Full Sequence	1.0	Sequence 2226 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236231.1	ncRNA:23   UCUAAGUAUCAUGAUCCUAUACA   1   |||||||||*||||||||||||| targets:59   AGAUUCAUAAUACUAGGAUAUGU   81 Target Full Sequence	1.0	Sequence 2226 from Patent EP2985353	NA	coding protein	psRNATarget
HI404101.1	ncRNA:23   UCUAAGUAUCAUGAUCCUAUACA   1   |||||||||*||||||||||||| targets:59   AGAUUCAUAAUACUAGGAUAUGU   81 Target Full Sequence	1.0	Sequence 2226 from Patent EP2074227	NA	coding protein	psRNATarget
AK288804.1	ncRNA:23   UCUAAGUAUCAUGAUCCUAUACA   1   |||||||||*||||||||||||| targets:2558   AGAUUCAUAAUACUAGGAUAUGU   2580 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090071D13, full insert sequence	NA	coding protein	psRNATarget
AK288793.1	ncRNA:23   UCUAAGUAUCAUGAUCCUAUACA   1   ||||||||||||||||||||*|| targets:864   AGAUUCAUAGUACUAGGAUACGU   886 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090070C08, full insert sequence	NA	coding protein	psRNATarget
HI403965.1	ncRNA:23   UCUAAGUAUCAUGAUCCUAUACA   1   |*|||||||||||||||||=||| targets:37   AAAUUCAUAGUACUAGGAUGUGU   59 Target Full Sequence	1.5	Sequence 2090 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236095.1	ncRNA:23   UCUAAGUAUCAUGAUCCUAUACA   1   |*|||||||||||||||||=||| targets:37   AAAUUCAUAGUACUAGGAUGUGU   59 Target Full Sequence	1.5	Sequence 2090 from Patent EP2985353	NA	coding protein	psRNATarget
JB164426.1	ncRNA:23   UCUAAGUAUCAUGAUCCUAUACA   1   |*|||||||||||||||||=||| targets:37   AAAUUCAUAGUACUAGGAUGUGU   59 Target Full Sequence	1.5	Sequence 2090 from Patent EP2559767	NA	coding protein	psRNATarget
JB164618.1	ncRNA:23   UCUAAGUAUCAUGAUCCUAUACA   1   ||||||||*||||||||||=||| targets:57   AGAUUCAUUGUACUAGGAUGUGU   79 Target Full Sequence	2.5	Sequence 2282 from Patent EP2559767	NA	coding protein	psRNATarget
HI404157.1	ncRNA:23   UCUAAGUAUCAUGAUCCUAUACA   1   ||||||||*||||||||||=||| targets:57   AGAUUCAUUGUACUAGGAUGUGU   79 Target Full Sequence	2.5	Sequence 2282 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236287.1	ncRNA:23   UCUAAGUAUCAUGAUCCUAUACA   1   ||||||||*||||||||||=||| targets:57   AGAUUCAUUGUACUAGGAUGUGU   79 Target Full Sequence	2.5	Sequence 2282 from Patent EP2985353	NA	coding protein	psRNATarget
JB164751.1	ncRNA:23   UCUAAGUAUCAUGAUCCUAUACA   1   ||||||||*||||||||||=||| targets:59   AGAUUCAUUGUACUAGGAUGUGU   81 Target Full Sequence	2.5	Sequence 2415 from Patent EP2559767	NA	coding protein	psRNATarget
HI404290.1	ncRNA:23   UCUAAGUAUCAUGAUCCUAUACA   1   ||||||||*||||||||||=||| targets:59   AGAUUCAUUGUACUAGGAUGUGU   81 Target Full Sequence	2.5	Sequence 2415 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236420.1	ncRNA:23   UCUAAGUAUCAUGAUCCUAUACA   1   ||||||||*||||||||||=||| targets:59   AGAUUCAUUGUACUAGGAUGUGU   81 Target Full Sequence	2.5	Sequence 2415 from Patent EP2985353	NA	coding protein	psRNATarget
AK107145.1	ncRNA:23   UCUAAGUAUCAUGAUCCUAUACA   1   ||||||=|||||||||*|||||| targets:1254   AGAUUCGUAGUACUAGAAUAUGU   1276 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-124-D07, full insert sequence	NA	coding protein	psRNATarget
XM_015782471.1	ncRNA:23   UCUAAGUAUCAUGAUCCUAUACA   1   ||||||=|||||||||*|||||| targets:1294   AGAUUCGUAGUACUAGAAUAUGU   1316 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4339433 (LOC4339433), mRNA	uncharacterized LOC4339433(LOC4339433)	coding protein	psRNATarget
AK099750.1	ncRNA:23   UCUAAGUAUCAUGAUCCUAUACA   1   |*||||=|||||||||||||||| targets:666   AAAUUCGUAGUACUAGGAUAUGU   688 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J013092A18, full insert sequence	NA	coding protein	psRNATarget
CT831784.1	ncRNA:23   UCUAAGUAUCAUGAUCCUAUACA   1   |*||||=|||||||||||||||| targets:672   AAAUUCGUAGUACUAGGAUAUGU   694 Target Full Sequence	1.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA225J14, full insert sequence	NA	coding protein	psRNATarget
AK101936.1	ncRNA:23   UCUAAGUAUCAUGAUCCUAUACA   1   ||||||=|||||||||||*|||| targets:1929   AGAUUCGUAGUACUAGGAAAUGU   1951 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033074D16, full insert sequence	NA	coding protein	psRNATarget
XM_015770193.1	ncRNA:23   UCUAAGUAUCAUGAUCCUAUACA   1   ||||||=||||||||||||||*| targets:1115   AGAUUCGUAGUACUAGGAUAUAU   1137 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4329136 (LOC4329136), transcript variant X1, mRNA	uncharacterized LOC4329136(LOC4329136)	coding protein	psRNATarget
JB164990.1	ncRNA:23   UCUAAGUAUCAUGAUCCUAUACA   1   **|||||||||||||||||=||| targets:105   UAAUUCAUAGUACUAGGAUGUGU   127 Target Full Sequence	1.5	Sequence 2654 from Patent EP2559767	NA	coding protein	psRNATarget
HI404529.1	ncRNA:23   UCUAAGUAUCAUGAUCCUAUACA   1   **|||||||||||||||||=||| targets:105   UAAUUCAUAGUACUAGGAUGUGU   127 Target Full Sequence	1.5	Sequence 2654 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236659.1	ncRNA:23   UCUAAGUAUCAUGAUCCUAUACA   1   **|||||||||||||||||=||| targets:105   UAAUUCAUAGUACUAGGAUGUGU   127 Target Full Sequence	1.5	Sequence 2654 from Patent EP2985353	NA	coding protein	psRNATarget
JB164507.1	ncRNA:23   UCUAAGUAUCAUGAUCCUAUACA   1   |||||==|*|||||||||||||| targets:38   AGAUUUGUUGUACUAGGAUAUGU   60 Target Full Sequence	3.0	Sequence 2171 from Patent EP2559767	NA	coding protein	psRNATarget
HI404046.1	ncRNA:23   UCUAAGUAUCAUGAUCCUAUACA   1   |||||==|*|||||||||||||| targets:38   AGAUUUGUUGUACUAGGAUAUGU   60 Target Full Sequence	3.0	Sequence 2171 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236176.1	ncRNA:23   UCUAAGUAUCAUGAUCCUAUACA   1   |||||==|*|||||||||||||| targets:38   AGAUUUGUUGUACUAGGAUAUGU   60 Target Full Sequence	3.0	Sequence 2171 from Patent EP2985353	NA	coding protein	psRNATarget
XM_015785966.1	ncRNA:23   UCUAAGUAUCAUGAUCCUAUACA   1   *|||||=||||||||||||||*| targets:1491   CGAUUCGUAGUACUAGGAUAUUU   1513 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group probable transcription factor KAN3 (LOC4341803), mRNA	probable transcription factor KAN3(LOC4341803)	coding protein	psRNATarget
AK241555.1	ncRNA:23   UCUAAGUAUCAUGAUCCUAUACA   1   ||||||*||*||||||||||||| targets:191   AGAUUCUUAAUACUAGGAUAUGU   213 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J065178B07, full insert sequence	NA	coding protein	psRNATarget
XM_015759388.1	ncRNA:23   UCUAAGUAUCAUGAUCCUAUACA   1   ||||||||*|||||||*|||||| targets:453   AGAUUCAUUGUACUAGAAUAUGU   475 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group ent-cassadiene C2-hydroxylase-like (LOC4348721), transcript variant X2, mRNA	ent-cassadiene C2-hydroxylase-like(LOC4348721)	coding protein	psRNATarget
AK108711.1	ncRNA:23   UCUAAGUAUCAUGAUCCUAUACA   1   |*||||=||||*||||||||||| targets:89   AUAUUCGUAGUCCUAGGAUAUGU   111 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-150-A12, full insert sequence	NA	coding protein	psRNATarget
XM_015770949.1	ncRNA:23   UCUAAGUAUCAUGAUCCUAUACA   1   |*||||=||||*||||||||||| targets:172   AUAUUCGUAGUCCUAGGAUAUGU   194 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group ammonium transporter 3 member 3 (LOC4329628), transcript variant X2, mRNA	ammonium transporter 3 member 3(LOC4329628)	coding protein	psRNATarget
XM_015770948.1	ncRNA:23   UCUAAGUAUCAUGAUCCUAUACA   1   |*||||=||||*||||||||||| targets:171   AUAUUCGUAGUCCUAGGAUAUGU   193 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group ammonium transporter 3 member 3 (LOC4329628), transcript variant X1, mRNA	ammonium transporter 3 member 3(LOC4329628)	coding protein	psRNATarget
AK289139.1	ncRNA:23   UCUAAGUAUCAUGAUCCUAUACA   1   |*||||=|*|||||||||||||| targets:1358   AAAUUCGUUGUACUAGGAUAUGU   1380 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090099E06, full insert sequence	NA	coding protein	psRNATarget
XM_015770952.1	ncRNA:23   UCUAAGUAUCAUGAUCCUAUACA   1   |*|*||=|||||||||||||||* targets:1372   AAAAUCGUAGUACUAGGAUAUGC   1394 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group putative phosphatidylinositol N-acetylglucosaminyltransferase subunit C (LOC4330019), mRNA	putative phosphatidylinositol N-acetylglucosaminyltransferase subunit C(LOC4330019)	coding protein	psRNATarget
AK120213.1	ncRNA:23   UCUAAGUAUCAUGAUCCUAUACA   1   *|*|||||*|||=|||||||||| targets:1346   CGCUUCAUUGUAUUAGGAUAUGU   1368 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013039G14, full insert sequence	NA	coding protein	psRNATarget
AK062793.1	ncRNA:23   UCUAAGUAUCAUGAUCCUAUACA   1   |*|||||||*||*|||||||||| targets:225   AUAUUCAUACUAAUAGGAUAUGU   247 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-107-C05, full insert sequence	NA	coding protein	psRNATarget
AK100614.1	ncRNA:23   UCUAAGUAUCAUGAUCCUAUACA   1   |*||||=|**||||||||||||| targets:1594   ACAUUCGUUAUACUAGGAUAUGU   1616 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J023108A15, full insert sequence	NA	coding protein	psRNATarget