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BaseInfo

ncRNA ID novel_osa_miR2742
Species Oryza sativa
Class miRNA
Genome position Chr1:765578-765733 [-]
Reference genome IRGSP-1.0
Source SRR1849786
Length 24
Mature sequence(if miRNA) 133 - UCCAACUUUGACUGUUCGUCUUAU - 156
Stem-loop(if miRNA) --     -C                  A     UUUUU    --AAUUC UAUUUUCAUUGUUGUUAGAUGAUAAAACAU
  UCCAA  UUUGACUGUUCGUCUUAU UGAAA     UUAU       G                              G
  |||||  |||||||||||||||||| |||||     ||||       |                              A
  GGGUU  AAACUGGCAGGCAGAAUA ACUUU     AAUA       U                              U
AC     AC                  A     --UUU    CUUUUUU AAUUUUUCUGUUCAGUGCGUAUUUUAUAAU
Stem-loop sequence UCCAACUUUGACUGUUCGUCUUAUAUGAAAUUUUUUUAUAAUUCGUAUUUUCAUUGUUGUUAGAUGAUAAAACAUGAUUAAUAUUUUAUGCGUGACUUGUCUUUUUAAUUUUUUUCAUAAUUUUUUCAAAUAAGACGGACGGUCAAACAUUGGGCA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK071213.1
ncRNA:24   UAUUCUGCUUGUCAGUUUCAACCU   1
  ||||||||=|||||||||||||||
targets:1109   AUAAGACGGACAGUCAAAGUUGGA   1132

1.0 Oryza sativa Japonica Group cDNA clone:J023087E24, full insert sequence NA coding protein psRNATarget
XM_015757480.1
ncRNA:24   UAUUCUGCUUGUCAGUUUCAACCU   1
  ||||||||=|||||||||||||||
targets:1159   AUAAGACGGACAGUCAAAGUUGGA   1182

1.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4348155 (LOC4348155), mRNA uncharacterized LOC4348155(LOC4348155) coding protein psRNATarget
AK100367.1
ncRNA:24   UAUUCUGCUUGUCAGUUUCAACCU   1
  ||||||||=|||||||||||||||
targets:1109   AUAAGACGGACAGUCAAAGUUGGA   1132

1.0 Oryza sativa Japonica Group cDNA clone:J023083P20, full insert sequence NA coding protein psRNATarget
AK065455.1
ncRNA:24   UAUUCUGCUUGUCAGUUUCAACCU   1
  ||||||||=|||||||||||||||
targets:3087   AUAAGACGGACAGUCAAAGUUGGA   3110

1.0 Oryza sativa Japonica Group cDNA clone:J013023H14, full insert sequence NA coding protein psRNATarget
AK068604.1
ncRNA:24   UAUUCUGCUUGUCAGUUUCAACCU   1
  ||||||||=|||||||||||||||
targets:2535   AUAAGACGGACAGUCAAAGUUGGA   2558

1.0 Oryza sativa Japonica Group cDNA clone:J013157G05, full insert sequence NA coding protein psRNATarget
XM_015781687.1
ncRNA:24   UAUUCUGCUUGUCAGUUUCAACCU   1
  ||||||||=|||||||||||||||
targets:2556   AUAAGACGGACAGUCAAAGUUGGA   2579

1.0 PREDICTED: Oryza sativa Japonica Group UDP-glycosyltransferase 92A1 (LOC4335348), transcript variant X1, mRNA UDP-glycosyltransferase 92A1(LOC4335348) coding protein psRNATarget
AK242028.1
ncRNA:24   UAUUCUGCUUGUCAGUUUCAACCU   1
  ||=|||||=|||||||||||||||
targets:1611   AUGAGACGGACAGUCAAAGUUGGA   1634

1.0 Oryza sativa Japonica Group cDNA, clone: J075115C11, full insert sequence NA coding protein psRNATarget
XM_015768738.1
ncRNA:24   UAUUCUGCUUGUCAGUUUCAACCU   1
  ||||||||=|||||=|||||||||
targets:1627   AUAAGACGGACAGUUAAAGUUGGA   1650

2.5 PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase At4g36180 (LOC4330148), mRNA probable LRR receptor-like serine/threonine-protein kinase At4g36180(LOC4330148) coding protein psRNATarget
XM_015776706.1
ncRNA:24   UAUUCUGCUUGUCAGUUUCAACCU   1
  ||=|||||=|||||||||||||||
targets:1722   AUGAGACGGACAGUCAAAGUUGGA   1745

1.0 PREDICTED: Oryza sativa Japonica Group glucan endo-1,3-beta-glucosidase 7 (LOC4332132), transcript variant X3, mRNA glucan endo-1,3-beta-glucosidase 7(LOC4332132) coding protein psRNATarget
XM_015776705.1
ncRNA:24   UAUUCUGCUUGUCAGUUUCAACCU   1
  ||=|||||=|||||||||||||||
targets:1728   AUGAGACGGACAGUCAAAGUUGGA   1751

1.0 PREDICTED: Oryza sativa Japonica Group glucan endo-1,3-beta-glucosidase 7 (LOC4332132), transcript variant X2, mRNA glucan endo-1,3-beta-glucosidase 7(LOC4332132) coding protein psRNATarget
XM_015776704.1
ncRNA:24   UAUUCUGCUUGUCAGUUUCAACCU   1
  ||=|||||=|||||||||||||||
targets:1734   AUGAGACGGACAGUCAAAGUUGGA   1757

1.0 PREDICTED: Oryza sativa Japonica Group glucan endo-1,3-beta-glucosidase 7 (LOC4332132), transcript variant X1, mRNA glucan endo-1,3-beta-glucosidase 7(LOC4332132) coding protein psRNATarget
AK242553.1
ncRNA:24   UAUUCUGCUUGUCAGUUUCAACCU   1
  ||||||||=|||||||||*|||||
targets:316   AUAAGACGGACAGUCAAAAUUGGA   339

2.5 Oryza sativa Japonica Group cDNA, clone: J080319L22, full insert sequence NA coding protein psRNATarget
AK287701.1
ncRNA:24   UAUUCUGCUUGUCAGUUUCAACCU   1
  ||||||||=||||||||||||*||
targets:3719   AUAAGACGGACAGUCAAAGUUAGA   3742

2.5 Oryza sativa Japonica Group cDNA, clone: J065130L06, full insert sequence NA coding protein psRNATarget
XM_015788892.1
ncRNA:24   UAUUCUGCUUGUCAGUUUCAACCU   1
  ||||||||=||||||||||||*||
targets:3848   AUAAGACGGACAGUCAAAGUUAGA   3871

2.5 PREDICTED: Oryza sativa Japonica Group LRR receptor-like serine/threonine-protein kinase FLS2 (LOC4340067), mRNA LRR receptor-like serine/threonine-protein kinase FLS2(LOC4340067) coding protein psRNATarget
XM_015780431.1
ncRNA:24   UAUUCUGCUUGUCAGUUUCAACCU   1
  ||||*|||=||||||||||||||=
targets:541   AUAACACGGACAGUCAAAGUUGGG   564

2.0 PREDICTED: Oryza sativa Japonica Group E3 ubiquitin ligase BIG BROTHER-related-like (LOC107276627), transcript variant X2, mRNA E3 ubiquitin ligase BIG BROTHER-related-like(LOC107276627) coding protein psRNATarget
XM_015780430.1
ncRNA:24   UAUUCUGCUUGUCAGUUUCAACCU   1
  ||||*|||=||||||||||||||=
targets:541   AUAACACGGACAGUCAAAGUUGGG   564

2.0 PREDICTED: Oryza sativa Japonica Group E3 ubiquitin ligase BIG BROTHER-related-like (LOC107276627), transcript variant X1, mRNA E3 ubiquitin ligase BIG BROTHER-related-like(LOC107276627) coding protein psRNATarget
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