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BaseInfo

ncRNA ID novel_osa_miR2739
Species Oryza sativa
Class miRNA
Genome position Chr11:4624785-4624961 [-]
Reference genome IRGSP-1.0
Source SRR1849786
Length 25
Mature sequence(if miRNA) 1 - GGUCAAACGUUGCAAGCAAAAACUG - 25
Stem-loop(if miRNA) --      A             U                         GA  U   -UAAUUAUUUUAU     A  -----    U   UA
  GUUUUU CUUGUAACGUUUG CCACUCGUCUUAUUCAAAUUUUUUU  AA UAU             UUGUG CU     UACU UAU  U
  |||||| ||||||||||||| |||||||||||||||||||||||||  || |||             ||||| ||     |||| |||
  CAAAAA GAACGUUGCAAAC GGUGAGCAGAAUAAGUUUAAAAAAA  UU AUA             AACAC GA     AUGA AUA  U
GU      C             U                         AG  U   UUUUUUGCUUUUU     -  AUUUC    C   UA
Stem-loop sequence GUUUUUACUUGUAACGUUUGUCCACUCGUCUUAUUCAAAUUUUUUUGAAAUUAUUAAUUAUUUUAUUUGUGACUUACUUUAUUAUUAUAUACAGUACUUUAAGCACAAUUUUUCGUUUUUUAUAUUUGAAAAAAAAUUUGAAUAAGACGAGUGGUCAAACGUUGCAAGCAAAAACUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK111038.1
ncRNA:25   GUCAAAAACGAACGUUGCAAACUGG   1
  *||||||||||||||||||||||||
targets:488   GAGUUUUUGCUUGCAACGUUUGACC   512

0.0 Oryza sativa Japonica Group cDNA clone:002-175-A10, full insert sequence NA coding protein psRNATarget
CT834713.1
ncRNA:25   GUCAAAAACGAACGUUGCAAACUGG   1
  *||||||||||||||||||||||||
targets:490   AAGUUUUUGCUUGCAACGUUUGACC   514

0.0 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA008G23, full insert sequence NA coding protein psRNATarget
XM_015761216.1
ncRNA:25   GUCAAAAACGAACGUUGCAAACUGG   1
  *||||||||||||=|||||||||||
targets:1290   AAGUUUUUGCUUGUAACGUUUGACC   1314

1.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4327188 (LOC4327188), transcript variant X3, mRNA uncharacterized LOC4327188(LOC4327188) coding protein psRNATarget
XM_015761224.1
ncRNA:25   GUCAAAAACGAACGUUGCAAACUGG   1
  *||||||||||||=|||||||||||
targets:1264   AAGUUUUUGCUUGUAACGUUUGACC   1288

1.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4327188 (LOC4327188), transcript variant X4, mRNA uncharacterized LOC4327188(LOC4327188) coding protein psRNATarget
XM_015761204.1
ncRNA:25   GUCAAAAACGAACGUUGCAAACUGG   1
  *||||||||||||=|||||||||||
targets:1219   AAGUUUUUGCUUGUAACGUUUGACC   1243

1.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4327188 (LOC4327188), transcript variant X1, mRNA uncharacterized LOC4327188(LOC4327188) coding protein psRNATarget
XM_015761210.1
ncRNA:25   GUCAAAAACGAACGUUGCAAACUGG   1
  *||||||||||||=|||||||||||
targets:1186   AAGUUUUUGCUUGUAACGUUUGACC   1210

1.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4327188 (LOC4327188), transcript variant X2, mRNA uncharacterized LOC4327188(LOC4327188) coding protein psRNATarget
AK064773.1
ncRNA:25   GUCAAAAACGAACGUUGCAAACUGG   1
  *||||||||||||=||||||||||=
targets:2908   GAGUUUUUGCUUGUAACGUUUGACU   2932

2.5 Oryza sativa Japonica Group cDNA clone:J013000A22, full insert sequence NA coding protein psRNATarget
AK100009.1
ncRNA:25   GUCAAAAACGAACGUUGCAAACUGG   1
  *||||||||||||=||||||||||=
targets:888   GAGUUUUUGCUUGUAACGUUUGACU   912

2.5 Oryza sativa Japonica Group cDNA clone:J013138B09, full insert sequence NA coding protein psRNATarget
AK289013.1
ncRNA:25   GUCAAAAACGAACGUUGCAAACUGG   1
  *|||||||*||||||||||||||||
targets:3850   GAGUUUUUACUUGCAACGUUUGACC   3874

1.0 Oryza sativa Japonica Group cDNA, clone: J090089J03, full insert sequence NA coding protein psRNATarget
AK288920.1
ncRNA:25   GUCAAAAACGAACGUUGCAAACUGG   1
  *|||||||*||||||||||||||||
targets:3905   GAGUUUUUACUUGCAACGUUUGACC   3929

1.0 Oryza sativa Japonica Group cDNA, clone: J090081L22, full insert sequence NA coding protein psRNATarget
XM_015763075.1
ncRNA:25   GUCAAAAACGAACGUUGCAAACUGG   1
  *|||||||||||*||||||||||||
targets:2838   GAGUUUUUGCUUACAACGUUUGACC   2862

1.5 PREDICTED: Oryza sativa Japonica Group protein trichome birefringence-like 28 (LOC4327430), transcript variant X3, mRNA protein trichome birefringence-like 28(LOC4327430) coding protein psRNATarget
XM_015766918.1
ncRNA:25   GUCAAAAACGAACGUUGCAAACUGG   1
  *|*||||||=|||||||||||||||
targets:3177   GAUUUUUUGUUUGCAACGUUUGACC   3201

1.0 PREDICTED: Oryza sativa Japonica Group putative disease resistance protein RGA1 (LOC4325115), mRNA putative disease resistance protein RGA1(LOC4325115) coding protein psRNATarget
AK288376.1
ncRNA:25   GUCAAAAACGAACGUUGCAAACUGG   1
  *|*||||||=|||||||||||||||
targets:3183   GAUUUUUUGUUUGCAACGUUUGACC   3207

1.0 Oryza sativa Japonica Group cDNA, clone: J090026K04, full insert sequence NA coding protein psRNATarget
AK098957.1
ncRNA:25   GUCAAAAACGAACGUUGCAAACUGG   1
  *||||||||*|||||||||||||=|
targets:2681   GAGUUUUUGAUUGCAACGUUUGAUC   2705

2.5 Oryza sativa Japonica Group cDNA clone:J013067B02, full insert sequence NA coding protein psRNATarget
XM_015767968.1
ncRNA:25   GUCAAAAACGAACGUUGCAAACUGG   1
  *||||||||=||*||||||||||||
targets:1434   GAGUUUUUGUUUACAACGUUUGACC   1458

2.5 PREDICTED: Oryza sativa Japonica Group altered inheritance rate of mitochondria protein 25 (LOC4328840), mRNA altered inheritance rate of mitochondria protein 25(LOC4328840) coding protein psRNATarget
XM_015780608.1
ncRNA:25   GUCAAAAACGAACGUUGCAAACUGG   1
  *|*||||||=|||=|||||||||||
targets:1728   GAUUUUUUGUUUGUAACGUUUGACC   1752

2.5 PREDICTED: Oryza sativa Japonica Group amino acid permease 3 (LOC4336246), mRNA amino acid permease 3(LOC4336246) coding protein psRNATarget
XM_015773784.1
ncRNA:25   GUCAAAAACGAACGUUGCAAACUGG   1
  *|*||||||*|||||||||||||||
targets:1922   GAAUUUUUGAUUGCAACGUUUGACC   1946

1.0 PREDICTED: Oryza sativa Japonica Group alanine aminotransferase 2 (LOC9266500), transcript variant X2, mRNA alanine aminotransferase 2(LOC9266500) coding protein psRNATarget
XM_015773783.1
ncRNA:25   GUCAAAAACGAACGUUGCAAACUGG   1
  *|*||||||*|||||||||||||||
targets:1828   GAAUUUUUGAUUGCAACGUUUGACC   1852

1.0 PREDICTED: Oryza sativa Japonica Group alanine aminotransferase 2 (LOC9266500), transcript variant X1, mRNA alanine aminotransferase 2(LOC9266500) coding protein psRNATarget
LQ236678.1
ncRNA:25   GUCAAAAACGAACGUUGCAAACUGG   1
  *||*|||*|||||||||||||||||
targets:7   GAGAUUUGGCUUGCAACGUUUGACC   31

1.0 Sequence 2673 from Patent EP2985353 NA coding protein psRNATarget
HI404548.1
ncRNA:25   GUCAAAAACGAACGUUGCAAACUGG   1
  *||*|||*|||||||||||||||||
targets:7   GAGAUUUGGCUUGCAACGUUUGACC   31

1.0 Sequence 2673 from Patent EP2074227 NA coding protein psRNATarget
JB165009.1
ncRNA:25   GUCAAAAACGAACGUUGCAAACUGG   1
  *||*|||*|||||||||||||||||
targets:7   GAGAUUUGGCUUGCAACGUUUGACC   31

1.0 Sequence 2673 from Patent EP2559767 NA coding protein psRNATarget
AK288330.1
ncRNA:25   GUCAAAAACGAACGUUGCAAACUGG   1
  *|*|||||*=|||||||||||||||
targets:1098   GACUUUUUAUUUGCAACGUUUGACC   1122

2.0 Oryza sativa Japonica Group cDNA, clone: J090022I21, full insert sequence NA coding protein psRNATarget
XM_015758393.1
ncRNA:25   GUCAAAAACGAACGUUGCAAACUGG   1
  *|*|||||*=|||||||||||||||
targets:1679   GACUUUUUAUUUGCAACGUUUGACC   1703

2.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4348660 (LOC4348660), mRNA uncharacterized LOC4348660(LOC4348660) coding protein psRNATarget
AK109674.1
ncRNA:25   GUCAAAAACGAACGUUGCAAACUGG   1
  *|*|||||*=|||||||||||||||
targets:1549   GACUUUUUAUUUGCAACGUUUGACC   1573

2.0 Oryza sativa Japonica Group cDNA clone:002-145-B06, full insert sequence NA coding protein psRNATarget
AK119275.1
ncRNA:25   GUCAAAAACGAACGUUGCAAACUGG   1
  ***|||||*||||=|||||||||||
targets:1824   GUCUUUUUUCUUGUAACGUUUGACC   1848

2.5 Oryza sativa Japonica Group cDNA clone:001-130-B07, full insert sequence NA coding protein psRNATarget
AK066510.1
ncRNA:25   GUCAAAAACGAACGUUGCAAACUGG   1
  ||*|*|||*||||=|||||||||||
targets:1278   CACUAUUUUCUUGUAACGUUUGACC   1302

2.5 Oryza sativa Japonica Group cDNA clone:J013068L16, full insert sequence NA coding protein psRNATarget
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