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BaseInfo

ncRNA ID novel_osa_miR2733
Species Oryza sativa
Class miRNA
Genome position Chr10:13465462-13465642 [+]
Reference genome IRGSP-1.0
Source SRR1849785
Length 22
Mature sequence(if miRNA) 160 - UUGUUGGACCAGAGCAAAUCUC - 181
Stem-loop(if miRNA) --                      A      C        U         AA        AA             A   GAACAAUGCCC
  GAUUUGCUCUGGUCCAAUAAAA GUACCU GAGGUACC GUACCUUAC  UACCAAAU  UUUCCGAUUGUUG AUC           A
  |||||||||||||||||||||| |||||| |||||||| |||||||||  ||||||||  ||||||||||||| |||           U
  CUAAACGAGACCAGGUUGUUUU CAUGGA CUCCAUGG CAUGGAGUG  AUGGUUUA  AAAGGCUAGCAAC UAG           C
CU                      A      A        C         CC        GC             C   AUCAACCUAUC
Stem-loop sequence GAUUUGCUCUGGUCCAAUAAAAAGUACCUCGAGGUACCUGUACCUUACAAUACCAAAUAAUUUCCGAUUGUUGAAUCGAACAAUGCCCAUCCUAUCCAACUAGAUCCAACGAUCGGAAACGAUUUGGUACCGUGAGGUACCGGUACCUCAAGGUACAUUUUGUUGGACCAGAGCAAAUCUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_015758597.1
ncRNA:22   CUCUAAACGAGACCAGGUUGUU   1
  |||||||||||||*||||||||
targets:827   GAGAUUUGCUCUGCUCCAACAA   848

1.5 PREDICTED: Oryza sativa Japonica Group probable glutathione S-transferase GSTU6 (LOC4349191), mRNA probable glutathione S-transferase GSTU6(LOC4349191) coding protein psRNATarget
AK059726.1
ncRNA:22   CUCUAAACGAGACCAGGUUGUU   1
  |||||||||||||*||||||||
targets:830   GAGAUUUGCUCUGCUCCAACAA   851

1.5 Oryza sativa Japonica Group cDNA clone:006-201-C07, full insert sequence NA coding protein psRNATarget
CT833476.1
ncRNA:22   CUCUAAACGAGACCAGGUUGUU   1
  |||||||||||||*||||||||
targets:920   GAGAUUUGCUCUGCUCCAACAA   941

1.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN072I05, full insert sequence NA coding protein psRNATarget
AF402801.1
ncRNA:22   CUCUAAACGAGACCAGGUUGUU   1
  |||||||||||||*||||||||
targets:846   GAGAUUUGCUCUGCUCCAACAA   867

1.5 Oryza sativa (japonica cultivar-group) clone S14053 putative glutathione S-transferase OsGSTU14 mRNA, complete cds NA coding protein psRNATarget
XM_015755454.1
ncRNA:22   CUCUAAACGAGACCAGGUUGUU   1
  |||||||||||*||||||||||
targets:981   GAGAUUUGCUCCGGUCCAACAA   1002

1.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4346980 (LOC4346980), mRNA uncharacterized LOC4346980(LOC4346980) coding protein psRNATarget
XM_015758418.1
ncRNA:22   CUCUAAACGAGACCAGGUUGUU   1
  |||||||*||||||||||||||
targets:1094   GAGAUUUUCUCUGGUCCAACAA   1115

1.0 PREDICTED: Oryza sativa Japonica Group putative F-box protein At1g23770 (LOC4348048), mRNA putative F-box protein At1g23770(LOC4348048) coding protein psRNATarget
AK107667.1
ncRNA:22   CUCUAAACGAGACCAGGUUGUU   1
  |||||||||||*||||||||||
targets:1042   GAGAUUUGCUCCGGUCCAACAA   1063

1.5 Oryza sativa Japonica Group cDNA clone:002-131-H04, full insert sequence NA coding protein psRNATarget
AK071096.1
ncRNA:22   CUCUAAACGAGACCAGGUUGUU   1
  |||||||*||||||||||||||
targets:1120   GAGAUUUUCUCUGGUCCAACAA   1141

1.0 Oryza sativa Japonica Group cDNA clone:J023080B21, full insert sequence NA coding protein psRNATarget
XM_015755204.1
ncRNA:22   CUCUAAACGAGACCAGGUUGUU   1
  |||||||||||*||||||||||
targets:1089   GAGAUUUGCUCCGGUCCAACAA   1110

1.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4347453 (LOC4347453), mRNA uncharacterized LOC4347453(LOC4347453) coding protein psRNATarget
AK241559.1
ncRNA:22   CUCUAAACGAGACCAGGUUGUU   1
  |||||||||||*||||||||||
targets:768   GAGAUUUGCUCCGGUCCAACAA   789

1.5 Oryza sativa Japonica Group cDNA, clone: J065178L07, full insert sequence NA coding protein psRNATarget
XM_015778221.1
ncRNA:22   CUCUAAACGAGACCAGGUUGUU   1
  |||||||||||*||||||||||
targets:2956   GAGAUUUGCUCCGGUCCAACAA   2977

1.5 PREDICTED: Oryza sativa Japonica Group wall-associated receptor kinase 3-like (LOC107278106), transcript variant X2, mRNA wall-associated receptor kinase 3-like(LOC107278106) coding protein psRNATarget
XM_015778220.1
ncRNA:22   CUCUAAACGAGACCAGGUUGUU   1
  |||||||||||*||||||||||
targets:3007   GAGAUUUGCUCCGGUCCAACAA   3028

1.5 PREDICTED: Oryza sativa Japonica Group wall-associated receptor kinase 3-like (LOC107278106), transcript variant X1, mRNA wall-associated receptor kinase 3-like(LOC107278106) coding protein psRNATarget
XM_015786123.1
ncRNA:22   CUCUAAACGAGACCAGGUUGUU   1
  |||||||*|||*||||||||||
targets:607   GAGAUUUACUCCGGUCCAACAA   628

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4340617 (LOC4340617), mRNA uncharacterized LOC4340617(LOC4340617) coding protein psRNATarget
AK287529.1
ncRNA:22   CUCUAAACGAGACCAGGUUGUU   1
  |||||||*|||*||||||||||
targets:118   GAGAUUUACUCCGGUCCAACAA   139

2.5 Oryza sativa Japonica Group cDNA, clone: J065001C03, full insert sequence NA coding protein psRNATarget
AK240791.1
ncRNA:22   CUCUAAACGAGACCAGGUUGUU   1
  |||||||*|||*||||||||||
targets:118   GAGAUUUACUCCGGUCCAACAA   139

2.5 Oryza sativa Japonica Group cDNA, clone: J065001C03, full insert sequence NA coding protein psRNATarget
JB164999.1
ncRNA:19   UAAACGAGACCAGGUUGUU   1
  ||||||||*||||||||||
targets:1   AUUUGCUCCGGUCCAACAA   19

1.5 Sequence 2663 from Patent EP2559767 NA coding protein psRNATarget
HI404538.1
ncRNA:19   UAAACGAGACCAGGUUGUU   1
  ||||||||*||||||||||
targets:1   AUUUGCUCCGGUCCAACAA   19

1.5 Sequence 2663 from Patent EP2074227 NA coding protein psRNATarget
LQ236668.1
ncRNA:19   UAAACGAGACCAGGUUGUU   1
  ||||||||*||||||||||
targets:1   AUUUGCUCCGGUCCAACAA   19

1.5 Sequence 2663 from Patent EP2985353 NA coding protein psRNATarget
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