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BaseInfo

ncRNA ID	novel_osa_miR2732
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:10132733-10132853 [-]
Reference genome	IRGSP-1.0
Source	SRR1849785
Length	24
Mature sequence(if miRNA)	98 - AAAUCACGAGACGGAUCUUUUGAG - 121
Stem-loop(if miRNA)	-     A      G            CUAGC            G      -    A U      AAAUC CGAGAC GAUCUUUUGAGC     UAACUAGUCCAU AUUAGC CAUA G GUUAC  ||||| |||||| ||||||||||||     |||||||||||| |||||| |||| | ||||A  UUUGG GCUCUG UUAGAAAACUCG     AUUGAUUAGGUG UAAUCG GUAU C CAAUG C     C      A            ----U            G      U    A U
Stem-loop sequence	AAAUCACGAGACGGAUCUUUUGAGCCUAGCUAACUAGUCCAUGAUUAGCCAUAAGUGUUACAGUAACUCAUAUGUGCUAAUGGUGGAUUAGUUAUGCUCAAAAGAUUAGUCUCGCGGUUUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK121199.1	ncRNA:24   GAGUUUUCUAGGCAGAGCACUAAA   1   ||||||||||=|||||||||=||| targets:1471   CUCAAAAGAUUCGUCUCGUGGUUU   1494 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023087G06, full insert sequence	NA	coding protein	psRNATarget
CT833754.1	ncRNA:24   GAGUUUUCUAGGCAGAGCACUAAA   1   ||=|||||||=|||||||||=||| targets:809   CUUAAAAGAUUCGUCUCGUGGUUU   832 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI026E11, full insert sequence	NA	coding protein	psRNATarget
AK062636.1	ncRNA:24   GAGUUUUCUAGGCAGAGCACUAAA   1   ||=|||||||=|||||||||=||| targets:807   CUUAAAAGAUUCGUCUCGUGGUUU   830 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-105-D02, full insert sequence	NA	coding protein	psRNATarget
XM_015790304.1	ncRNA:24   GAGUUUUCUAGGCAGAGCACUAAA   1   ||=|||||||=|||||||||=||| targets:815   CUUAAAAGAUUCGUCUCGUGGUUU   838 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group RING-H2 finger protein ATL45 (LOC4344335), mRNA	RING-H2 finger protein ATL45(LOC4344335)	coding protein	psRNATarget
AK103318.1	ncRNA:24   GAGUUUUCUAGGCAGAGCACUAAA   1   ||||||||||=|||||||*||||| targets:1158   CUCAAAAGAUUCGUCUCGCGAUUU   1181 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033125I08, full insert sequence	NA	coding protein	psRNATarget
XM_015761412.1	ncRNA:24   GAGUUUUCUAGGCAGAGCACUAAA   1   ||||||||||=|||||||*||||| targets:636   CUCAAAAGAUUCGUCUCGCGAUUU   659 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group nucleobase-ascorbate transporter 2 (LOC4325616), mRNA	nucleobase-ascorbate transporter 2(LOC4325616)	coding protein	psRNATarget
AK067512.1	ncRNA:24   GAGUUUUCUAGGCAGAGCACUAAA   1   ||||||||||=|||||||*||||| targets:1192   CUCAAAAGAUUCGUCUCGCGAUUU   1215 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013109G08, full insert sequence	NA	coding protein	psRNATarget
XM_015773668.1	ncRNA:24   GAGUUUUCUAGGCAGAGCACUAAA   1   ||=|||||||=||||||||*|||| targets:1803   CUUAAAAGAUUCGUCUCGUAAUUU   1826 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9269613 (LOC9269613), mRNA	uncharacterized LOC9269613(LOC9269613)	coding protein	psRNATarget
AK101179.1	ncRNA:24   GAGUUUUCUAGGCAGAGCACUAAA   1   ||=|||||||=|||||||*||||| targets:2729   CUUAAAAGAUUCGUCUCGCGAUUU   2752 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033029D23, full insert sequence	NA	coding protein	psRNATarget
AK288660.1	ncRNA:24   GAGUUUUCUAGGCAGAGCACUAAA   1   ||=|||||||=||||||||*|||| targets:2424   CUUAAAAGAUUCGUCUCGUAAUUU   2447 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090057N05, full insert sequence	NA	coding protein	psRNATarget
XM_015769938.1	ncRNA:24   GAGUUUUCUAGGCAGAGCACUAAA   1   =|=|||||||=||||||||*|||| targets:1987   UUUAAAAGAUUCGUCUCGUAAUUU   2010 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group OTU domain-containing protein 5-A (LOC4331162), transcript variant X2, mRNA	OTU domain-containing protein 5-A(LOC4331162)	coding protein	psRNATarget
XM_015769937.1	ncRNA:24   GAGUUUUCUAGGCAGAGCACUAAA   1   =|=|||||||=||||||||*|||| targets:2080   UUUAAAAGAUUCGUCUCGUAAUUU   2103 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group OTU domain-containing protein 5-A (LOC4331162), transcript variant X1, mRNA	OTU domain-containing protein 5-A(LOC4331162)	coding protein	psRNATarget
AK119352.1	ncRNA:24   GAGUUUUCUAGGCAGAGCACUAAA   1   =|=|||||||=||||||||*|||| targets:2074   UUUAAAAGAUUCGUCUCGUAAUUU   2097 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-131-F04, full insert sequence	NA	coding protein	psRNATarget
AK288820.1	ncRNA:24   GAGUUUUCUAGGCAGAGCACUAAA   1   |*||||||||=|||||||*||||| targets:3107   CACAAAAGAUUCGUCUCGCGAUUU   3130 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090073D04, full insert sequence	NA	coding protein	psRNATarget
AK066254.1	ncRNA:24   GAGUUUUCUAGGCAGAGCACUAAA   1   ***|===|||=||||||||||||| targets:320   GGGAGGGGAUUCGUCUCGUGAUUU   343 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J013058M17, full insert sequence	NA	coding protein	psRNATarget
AK101028.1	ncRNA:24   GAGUUUUCUAGGCAGAGCACUAAA   1   ***|===|||=||||||||||||| targets:320   GGGAGGGGAUUCGUCUCGUGAUUU   343 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J023150G18, full insert sequence	NA	coding protein	psRNATarget