Search result

BaseInfo

ncRNA ID	novel_osa_miR2730
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:34031634-34031806 [-]
Reference genome	IRGSP-1.0
Source	SRR1849784;SRR2040403;SRR2040411;SRR4407955;SRR4407960;SRR4407961
Length	24
Mature sequence(if miRNA)	150 - UUUUUGCUUGCACUGUUUGACCAU - 173
Stem-loop(if miRNA)	--UU        C         C                       -  G  U   -UAUUUAUUUUAU     A    UUU    AU     UUUGCUUG ACUGUUUGA CAUUCGUCUUAUUUAAAAAAUUU UG AA UAU             UUGUG CUUA   UAUU  C     |||||||| ||||||||| ||||||||||||||||||||||| || || |||             ||||| ||||   ||||     AAACGAAC UGACAAACU GUGAGCAGAAUAAGUUUUUUAAA AC UU AUA             AACAC GAAU   AUGA  C UAUC        A         A                       C  G  U   UUUUUUACUUUUC     -    UUC    AA
Stem-loop sequence	UUUUUGCUUGCACUGUUUGACCAUUCGUCUUAUUUAAAAAAUUUUGGAAUUAUUAUUUAUUUUAUUUGUGACUUAUUUUAUUAUCCAAAGUACUUUAAGCACAACUUUUCAUUUUUUAUAUUUGCACAAAUUUUUUGAAUAAGACGAGUGAUCAAACAGUACAAGCAAACUAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
CT837708.1	ncRNA:24   UACCAGUUUGUCACGUUCGUUUUU   1   =||||||||||||||||||||||| targets:672   GUGGUCAAACAGUGCAAGCAAAAA   695 Target Full Sequence	0.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA220M04, full insert sequence	NA	coding protein	psRNATarget
AK066510.1	ncRNA:24   UACCAGUUUGUCACGUUCGUUUUU   1   |||||||||||||||||||||||* targets:1428   AUGGUCAAACAGUGCAAGCAAAAU   1451 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J013068L16, full insert sequence	NA	coding protein	psRNATarget
AK288595.1	ncRNA:24   UACCAGUUUGUCACGUUCGUUUUU   1   =|||||||||=||||||||||||| targets:813   GUGGUCAAACGGUGCAAGCAAAAA   836 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090051J16, full insert sequence	NA	coding protein	psRNATarget
XM_015790568.1	ncRNA:24   UACCAGUUUGUCACGUUCGUUUUU   1   =|||||||||=||||||||||||| targets:874   GUGGUCAAACGGUGCAAGCAAAAA   897 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107277036 (LOC107277036), mRNA	uncharacterized LOC107277036(Os07g0616850)	coding protein	psRNATarget
AK288203.1	ncRNA:24   UACCAGUUUGUCACGUUCGUUUUU   1   |||||||||||||||||||||||* targets:1707   AUGGUCAAACAGUGCAAGCAAAAU   1730 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090008K12, full insert sequence	NA	coding protein	psRNATarget
AK289013.1	ncRNA:24   UACCAGUUUGUCACGUUCGUUUUU   1   =||||=|||||||||||||||||| targets:1531   GUGGUUAAACAGUGCAAGCAAAAA   1554 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090089J03, full insert sequence	NA	coding protein	psRNATarget
CT837645.1	ncRNA:24   UACCAGUUUGUCACGUUCGUUUUU   1   ||||||||||||||||||=||||* targets:609   AUGGUCAAACAGUGCAAGUAAAAU   632 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN063B15, full insert sequence	NA	coding protein	psRNATarget
AK068624.1	ncRNA:24   UACCAGUUUGUCACGUUCGUUUUU   1   =||||||||||||||||||||||* targets:189   GUGGUCAAACAGUGCAAGCAAAAU   212 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J013153F11, full insert sequence	NA	coding protein	psRNATarget
AK289150.1	ncRNA:24   UACCAGUUUGUCACGUUCGUUUUU   1   =||||=|||||||||||||||||* targets:2733   GUGGUUAAACAGUGCAAGCAAAAU   2756 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090099O03, full insert sequence	NA	coding protein	psRNATarget
AK102017.1	ncRNA:24   UACCAGUUUGUCACGUUCGUUUUU   1   ||||||||||=*|||||||||||| targets:1057   AUGGUCAAACGUUGCAAGCAAAAA   1080 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033080F19, full insert sequence	NA	coding protein	psRNATarget
AK106768.1	ncRNA:24   UACCAGUUUGUCACGUUCGUUUUU   1   =||||||||||*|||||||||||| targets:298   GUGGUCAAACAAUGCAAGCAAAAA   321 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-115-F05, full insert sequence	NA	coding protein	psRNATarget
AK288846.1	ncRNA:24   UACCAGUUUGUCACGUUCGUUUUU   1   =||*|||||||||||||||||||| targets:61   GUGAUCAAACAGUGCAAGCAAAAA   84 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090075E22, full insert sequence	NA	coding protein	psRNATarget
AK100009.1	ncRNA:24   UACCAGUUUGUCACGUUCGUUUUU   1   =|||||||||=*|||||||||||| targets:1038   GUGGUCAAACGUUGCAAGCAAAAA   1061 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013138B09, full insert sequence	NA	coding protein	psRNATarget
AK064773.1	ncRNA:24   UACCAGUUUGUCACGUUCGUUUUU   1   =|||||||||=*|||||||||||| targets:3058   GUGGUCAAACGUUGCAAGCAAAAA   3081 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013000A22, full insert sequence	NA	coding protein	psRNATarget
AK288920.1	ncRNA:24   UACCAGUUUGUCACGUUCGUUUUU   1   =|||||||||=*|||||||||||| targets:4054   GUGGUCAAACGUUGCAAGCAAAAA   4077 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090081L22, full insert sequence	NA	coding protein	psRNATarget
XM_015773783.1	ncRNA:24   UACCAGUUUGUCACGUUCGUUUUU   1   =||*||||||=*|||||||||||| targets:1978   GUGAUCAAACGUUGCAAGCAAAAA   2001 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group alanine aminotransferase 2 (LOC9266500), transcript variant X1, mRNA	alanine aminotransferase 2(LOC9266500)	coding protein	psRNATarget
XM_015773784.1	ncRNA:24   UACCAGUUUGUCACGUUCGUUUUU   1   =||*||||||=*|||||||||||| targets:2072   GUGAUCAAACGUUGCAAGCAAAAA   2095 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group alanine aminotransferase 2 (LOC9266500), transcript variant X2, mRNA	alanine aminotransferase 2(LOC9266500)	coding protein	psRNATarget