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BaseInfo

ncRNA ID novel_osa_miR2726
Species Oryza sativa
Class miRNA
Genome position Chr1:42855132-42855239 [+]
Reference genome IRGSP-1.0
Source SRR1849784
Length 24
Mature sequence(if miRNA) 85 - GUUACGAGAUGUAGAAGUUGAAUU - 108
Stem-loop(if miRNA) --                  C           A      UG   ----   AA  U
  UUCAACUUCUACAUCUCG AACGAAAAAAA CAAAUU  GCU    CUG  UA A
  |||||||||||||||||| ||||||||||| ||||||  |||    |||  || C
  AAGUUGAAGAUGUAGAGC UUGCUUUUUUU GUUUAA  UGG    GAU  AU G
UU                  A           -      CU   CGUC   CA  U
Stem-loop sequence UUCAACUUCUACAUCUCGCAACGAAAAAAAACAAAUUUGGCUCUGAAUAUACGUUAACUAGCUGCGGUUCAAUUUGUUUUUUUCGUUACGAGAUGUAGAAGUUGAAUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_015793191.1
ncRNA:24   UUAAGUUGAAGAUGUAGAGCAUUG   1
  |||||||=||*|||||||||||||
targets:454   AAUUCAAUUUAUACAUCUCGUAAC   477

2.0 PREDICTED: Oryza sativa Japonica Group probable receptor-like protein kinase At1g67000 (LOC4327950), transcript variant X1, mRNA probable receptor-like protein kinase At1g67000(LOC4327950) coding protein psRNATarget
XM_015792915.1
ncRNA:24   UUAAGUUGAAGAUGUAGAGCAUUG   1
  ||||=|||||||||||||||*|||
targets:1889   AAUUUAACUUCUACAUCUCGCAAC   1912

1.5 PREDICTED: Oryza sativa Japonica Group UDP-glycosyltransferase 89B1 (LOC4345896), transcript variant X1, mRNA UDP-glycosyltransferase 89B1(LOC4345896) coding protein psRNATarget
XM_015793197.1
ncRNA:24   UUAAGUUGAAGAUGUAGAGCAUUG   1
  |||||||=||*|||||||||||||
targets:456   AAUUCAAUUUAUACAUCUCGUAAC   479

2.0 PREDICTED: Oryza sativa Japonica Group probable receptor-like protein kinase At1g67000 (LOC4327950), transcript variant X2, mRNA probable receptor-like protein kinase At1g67000(LOC4327950) coding protein psRNATarget