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BaseInfo

ncRNA ID	novel_osa_miR2720
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:29963438-29963640 [+]
Reference genome	IRGSP-1.0
Source	SRR1849784;SRR1849787;SRR2040398;SRR2040404;SRR1609316
Length	23
Mature sequence(if miRNA)	1 - AAACGUAGAUUACUGACAAAACU - 23
Stem-loop(if miRNA)	--                     C  -               AU                  C   CG G              A   U  UACAG    -  U   AAACGUAGAUUACUGACAAAA UC AUUCUAUAACCUCUA  CUAUUUUGCGAGACGAAU UAA  A GUAUAUUAAUCUAU AUU GC     UGAU GC A   ||||||||||||||||||||| || |||||||||||||||  |||||||||||||||||| |||  | |||||||||||||| ||| ||     |||| ||   UUUGCAUCUAAUGGCUGUUUU AG UAAGGUAUUGGGGAU  GAUAAAACGCUCUGCUUA AUU  U CAUAUGAUUAGGUA UAA CG     ACUA UG C AA                     -  C               CC                  A   AU A              C   U  --UUA    A  A
Stem-loop sequence	AAACGUAGAUUACUGACAAAACUCAUUCUAUAACCUCUAAUCUAUUUUGCGAGACGAAUCUAACGAGGUAUAUUAAUCUAUAAUUUGCUACAGUGAUGCUACAGUAAUCAAUUGCUAAUCAUGGAUUAGUAUACAUUAUUAAAUUCGUCUCGCAAAAUAGCCUAGGGGUUAUGGAAUCGAUUUUGUCGGUAAUCUACGUUUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK240978.1	ncRNA:23   UCAAAACAGUCAUUAGAUGCAAA   1   ||||||||*|||||||||=|||| targets:542   AGUUUUGUAAGUAAUCUAUGUUU   564 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065048J02, full insert sequence	NA	coding protein	psRNATarget
XM_015781418.1	ncRNA:23   UCAAAACAGUCAUUAGAUGCAAA   1   =|||||*|||||||||||=|||| targets:1307   GGUUUUAUCAGUAAUCUAUGUUU   1329 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group serine/arginine repetitive matrix protein 1 (LOC4335446), mRNA	serine/arginine repetitive matrix protein 1(LOC4335446)	coding protein	psRNATarget
AK107263.1	ncRNA:23   UCAAAACAGUCAUUAGAUGCAAA   1   =|||||*|||||||||||=|||| targets:1218   GGUUUUAUCAGUAAUCUAUGUUU   1240 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-125-H03, full insert sequence	NA	coding protein	psRNATarget
XM_015766387.1	ncRNA:23   UCAAAACAGUCAUUAGAUGCAAA   1   *|||||||=|*|||||||||||| targets:23   UGUUUUGUUAUUAAUCUACGUUU   45 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4325753 (LOC4325753), mRNA	uncharacterized LOC4325753(LOC4325753)	coding protein	psRNATarget
XM_015762321.1	ncRNA:23   UCAAAACAGUCAUUAGAUGCAAA   1   |*||||*|||||||||||||||| targets:1111   AAUUUUAUCAGUAAUCUACGUUU   1133 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group transcription initiation factor TFIID subunit 13 (LOC9268703), mRNA	transcription initiation factor TFIID subunit 13(LOC9268703)	coding protein	psRNATarget