Search result

BaseInfo

ncRNA ID	novel_osa_miR2719
Species	Oryza sativa
Class	miRNA
Genome position	Chr5:20413418-20413635 [-]
Reference genome	IRGSP-1.0
Source	SRR1555747;SRR1555749;SRR2099746;SRR1556016;SRR1556020
Length	24
Mature sequence(if miRNA)	195 - AAGUAUUAAACGUAGACUAAUGAU - 218
Stem-loop(if miRNA)	--          CG       AUG        C   C    --ACCC   --AC     C      CAAAUAUA                          C     GA   U   AAGUAUUAAA  UAGACUA   AUAAAACU AUU CGUA      UGA    UAAUU GCGAGA        UUGAGCCUAAUUAAUCCAUGAUUAGC UAUGU  UGC A   ||||||||||  |||||||   |||||||| ||| ||||      |||    ||||| ||||||        |||||||||||||||||||||||||| |||||  |||   UUCAUAAUUU  AUCUGAU   UGUUUUGA UAA GCAU      ACU    GUUAA CGCUCU        AAUUCGGAUUAAUUAGGUAUUAAUCG GUACA  AUG C AC          AU       GAA        U   U    GUAUUU   CUCA     A      -AUUAAAA                          U     -A   A
Stem-loop sequence	AAGUAUUAAACGUAGACUAAUGAUAAAACUCAUUCCGUAACCCUGAACUAAUUCGCGAGACAAAUAUAUUGAGCCUAAUUAAUCCAUGAUUAGCCUAUGUGAUGCUACAGUAAACAUGUGCUAAUUAUGGAUUAAUUAGGCUUAAAAAAUUAUCUCGCAAAUUGACUCUCAUUUAUGUACGUAAUUAGUUUUGUAAGUAGUCUAUAUUUAAUACUUCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288236.1	ncRNA:24   UAGUAAUCAGAUGCAAAUUAUGAA   1   =||||||||||||||||||||||| targets:1892   GUCAUUAGUCUACGUUUAAUACUU   1915 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090013E07, full insert sequence	NA	coding protein	psRNATarget
XM_015764825.1	ncRNA:24   UAGUAAUCAGAUGCAAAUUAUGAA   1   =|=||||||||||||||||||||| targets:112   GUUAUUAGUCUACGUUUAAUACUU   135 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group pre-mRNA-splicing factor CWC22 homolog (LOC4351904), mRNA	pre-mRNA-splicing factor CWC22 homolog(LOC4351904)	coding protein	psRNATarget
AM778048.1	ncRNA:24   UAGUAAUCAGAUGCAAAUUAUGAA   1   =|=||||||||||||||||||||| targets:112   GUUAUUAGUCUACGUUUAAUACUU   135 Target Full Sequence	0.0	Oryza sativa Japonica Group mRNA for putative pre-mRNA-splicing factor cwc-22 (Os12g15420 gene), cultivar Azucena	NA	coding protein	psRNATarget
AK067578.1	ncRNA:24   UAGUAAUCAGAUGCAAAUUAUGAA   1   ||=||||||||||||||||||=|| targets:1809   AUUAUUAGUCUACGUUUAAUAUUU   1832 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013110M15, full insert sequence	NA	coding protein	psRNATarget
AK119753.1	ncRNA:24   UAGUAAUCAGAUGCAAAUUAUGAA   1   =|=||||||||||||||||||||| targets:2066   GUUAUUAGUCUACGUUUAAUACUU   2089 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:002-167-E02, full insert sequence	NA	coding protein	psRNATarget
AK288343.1	ncRNA:24   UAGUAAUCAGAUGCAAAUUAUGAA   1   *|=||||||||||||||||||||| targets:394   UUUAUUAGUCUACGUUUAAUACUU   417 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090023K08, full insert sequence	NA	coding protein	psRNATarget
AK288216.1	ncRNA:24   UAGUAAUCAGAUGCAAAUUAUGAA   1   =|=|||||||||=||||||||||| targets:771   GUUAUUAGUCUAUGUUUAAUACUU   794 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090011C22, full insert sequence	NA	coding protein	psRNATarget
XM_015769825.1	ncRNA:24   UAGUAAUCAGAUGCAAAUUAUGAA   1   =|=|||||||||=||||||||||| targets:766   GUUAUUAGUCUAUGUUUAAUACUU   789 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group BTB/POZ domain-containing protein At4g30940 (LOC4329965), mRNA	BTB/POZ domain-containing protein At4g30940(LOC4329965)	coding protein	psRNATarget
AK288682.1	ncRNA:24   UAGUAAUCAGAUGCAAAUUAUGAA   1   =|=|||||||||=||||||||||| targets:482   GUUAUUAGUCUAUGUUUAAUACUU   505 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090059I11, full insert sequence	NA	coding protein	psRNATarget
CT837782.1	ncRNA:24   UAGUAAUCAGAUGCAAAUUAUGAA   1   =|=|||||||||=||||||||||| targets:865   GUUAUUAGUCUAUGUUUAAUACUU   888 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA244J06, full insert sequence	NA	coding protein	psRNATarget
AK288873.1	ncRNA:24   UAGUAAUCAGAUGCAAAUUAUGAA   1   ||=|*||||||||||||||||=|| targets:5669   AUUAAUAGUCUACGUUUAAUAUUU   5692 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090078I24, full insert sequence	NA	coding protein	psRNATarget
AK288631.1	ncRNA:24   UAGUAAUCAGAUGCAAAUUAUGAA   1   =|=|||||*||||||||||||||| targets:2864   GUUAUUAGACUACGUUUAAUACUU   2887 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090055C12, full insert sequence	NA	coding protein	psRNATarget
AK288937.1	ncRNA:24   UAGUAAUCAGAUGCAAAUUAUGAA   1   =|=|||||||||*||||||||||| targets:8   GUUAUUAGUCUAAGUUUAAUACUU   31 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090082N15, full insert sequence	NA	coding protein	psRNATarget
AK288908.1	ncRNA:24   UAGUAAUCAGAUGCAAAUUAUGAA   1   =|=|||||*||||||||||||||| targets:807   GUUAUUAGACUACGUUUAAUACUU   830 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090081D16, full insert sequence	NA	coding protein	psRNATarget
XM_015766387.1	ncRNA:24   UAGUAAUCAGAUGCAAAUUAUGAA   1   =|=||||*|||||||||||||||| targets:29   GUUAUUAAUCUACGUUUAAUACUU   52 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4325753 (LOC4325753), mRNA	uncharacterized LOC4325753(LOC4325753)	coding protein	psRNATarget
AK064922.1	ncRNA:24   UAGUAAUCAGAUGCAAAUUAUGAA   1   ||=|||||*|||||||||=||||| targets:2085   AUUAUUAGACUACGUUUAGUACUU   2108 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013000N12, full insert sequence	NA	coding protein	psRNATarget
AK288192.1	ncRNA:24   UAGUAAUCAGAUGCAAAUUAUGAA   1   =|=|||||*||||||||||||||| targets:1982   GUUAUUAGACUACGUUUAAUACUU   2005 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090007C12, full insert sequence	NA	coding protein	psRNATarget
AK288948.1	ncRNA:24   UAGUAAUCAGAUGCAAAUUAUGAA   1   =|=|||||*||||||||||||||| targets:2452   GUUAUUAGACUACGUUUAAUACUU   2475 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090083I09, full insert sequence	NA	coding protein	psRNATarget
AK119775.1	ncRNA:24   UAGUAAUCAGAUGCAAAUUAUGAA   1   ||=|||||*|||=||||||||||| targets:887   AUUAUUAGACUAUGUUUAAUACUU   910 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-172-G07, full insert sequence	NA	coding protein	psRNATarget
XM_015767213.1	ncRNA:24   UAGUAAUCAGAUGCAAAUUAUGAA   1   ||=|*||||||||||||||||=|| targets:1993   AUUAAUAGUCUACGUUUAAUAUUU   2016 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group beclin-1-like protein (LOC4324394), transcript variant X1, mRNA	beclin-1-like protein(LOC4324394)	coding protein	psRNATarget
XM_015767222.1	ncRNA:24   UAGUAAUCAGAUGCAAAUUAUGAA   1   ||=|*||||||||||||||||=|| targets:1975   AUUAAUAGUCUACGUUUAAUAUUU   1998 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group beclin-1-like protein (LOC4324394), transcript variant X2, mRNA	beclin-1-like protein(LOC4324394)	coding protein	psRNATarget
AK101033.1	ncRNA:24   UAGUAAUCAGAUGCAAAUUAUGAA   1   ||=|*||||||||||||||||=|| targets:1976   AUUAAUAGUCUACGUUUAAUAUUU   1999 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023150N19, full insert sequence	NA	coding protein	psRNATarget
XM_015794883.1	ncRNA:24   UAGUAAUCAGAUGCAAAUUAUGAA   1   ||=|*||||||||||||||||=|| targets:144   AUUAAUAGUCUACGUUUAAUAUUU   167 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107282066 (LOC107282066), mRNA	uncharacterized LOC107282066(LOC107282066)	coding protein	psRNATarget
AK099913.1	ncRNA:24   UAGUAAUCAGAUGCAAAUUAUGAA   1   ||=|||||*|||||||||=||||| targets:842   AUUAUUAGACUACGUUUAGUACUU   865 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013116E13, full insert sequence	NA	coding protein	psRNATarget
CT833304.1	ncRNA:24   UAGUAAUCAGAUGCAAAUUAUGAA   1   ||=|*||||||||||||||||=|| targets:1375   AUUAAUAGUCUACGUUUAAUAUUU   1398 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN010D02, full insert sequence	NA	coding protein	psRNATarget
CT828685.1	ncRNA:24   UAGUAAUCAGAUGCAAAUUAUGAA   1   =|=|||||*||||||||||||||| targets:936   GUUAUUAGACUACGUUUAAUACUU   959 Target Full Sequence	1.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA124K24, full insert sequence	NA	coding protein	psRNATarget
XM_015789357.1	ncRNA:24   UAGUAAUCAGAUGCAAAUUAUGAA   1   =|=|||||*||||||||||||||| targets:1157   GUUAUUAGACUACGUUUAAUACUU   1180 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group peptidyl-prolyl cis-trans isomerase FKBP19, chloroplastic (LOC4342342), transcript variant X2, mRNA	peptidyl-prolyl cis-trans isomerase FKBP19, chloroplastic(LOC4342342)	coding protein	psRNATarget
XM_015789358.1	ncRNA:24   UAGUAAUCAGAUGCAAAUUAUGAA   1   =|=|||||*||||||||||||||| targets:1192   GUUAUUAGACUACGUUUAAUACUU   1215 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group peptidyl-prolyl cis-trans isomerase FKBP19, chloroplastic (LOC4342342), transcript variant X3, mRNA	peptidyl-prolyl cis-trans isomerase FKBP19, chloroplastic(LOC4342342)	coding protein	psRNATarget
XM_015789356.1	ncRNA:24   UAGUAAUCAGAUGCAAAUUAUGAA   1   =|=|||||*||||||||||||||| targets:1186   GUUAUUAGACUACGUUUAAUACUU   1209 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group peptidyl-prolyl cis-trans isomerase FKBP19, chloroplastic (LOC4342342), transcript variant X1, mRNA	peptidyl-prolyl cis-trans isomerase FKBP19, chloroplastic(LOC4342342)	coding protein	psRNATarget
AK240803.1	ncRNA:24   UAGUAAUCAGAUGCAAAUUAUGAA   1   =|=|||||*||||||||||||||| targets:1097   GUUAUUAGACUACGUUUAAUACUU   1120 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J065005A21, full insert sequence	NA	coding protein	psRNATarget
AK242281.1	ncRNA:24   UAGUAAUCAGAUGCAAAUUAUGAA   1   *|=|||||||||=||||||||||* targets:1799   UUUAUUAGUCUAUGUUUAAUACUC   1822 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J075189D01, full insert sequence	NA	coding protein	psRNATarget
AK100185.1	ncRNA:24   UAGUAAUCAGAUGCAAAUUAUGAA   1   *|=|||||||||=||||||||||* targets:863   UUUAUUAGUCUAUGUUUAAUACUC   886 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023031M16, full insert sequence	NA	coding protein	psRNATarget
AK288369.1	ncRNA:24   UAGUAAUCAGAUGCAAAUUAUGAA   1   =|=|||||*|||=||||||||||| targets:2853   GUUAUUAGACUAUGUUUAAUACUU   2876 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090025P19, full insert sequence	NA	coding protein	psRNATarget
AK288868.1	ncRNA:24   UAGUAAUCAGAUGCAAAUUAUGAA   1   ||==*||||||||||||||||=|| targets:4808   AUUGAUAGUCUACGUUUAAUAUUU   4831 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090078E01, full insert sequence	NA	coding protein	psRNATarget
XM_015775745.1	ncRNA:24   UAGUAAUCAGAUGCAAAUUAUGAA   1   =|=|||||*||=|||||||||||| targets:401   GUUAUUAGACUGCGUUUAAUACUU   424 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group transcription factor BHLH148 (LOC4334060), mRNA	transcription factor BHLH148(LOC4334060)	coding protein	psRNATarget
AK288390.1	ncRNA:24   UAGUAAUCAGAUGCAAAUUAUGAA   1   =|=|||||*|||=||||||||||| targets:23   GUUAUUAGACUAUGUUUAAUACUU   46 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090027G18, full insert sequence	NA	coding protein	psRNATarget
AK288843.1	ncRNA:24   UAGUAAUCAGAUGCAAAUUAUGAA   1   =|=|||=|*||||||||||||||| targets:2262   GUUAUUGGGCUACGUUUAAUACUU   2285 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090074J10, full insert sequence	NA	coding protein	psRNATarget
AK243163.1	ncRNA:24   UAGUAAUCAGAUGCAAAUUAUGAA   1   =|=|||||*||=|||||||||||| targets:345   GUUAUUAGACUGCGUUUAAUACUU   368 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J100034L01, full insert sequence	NA	coding protein	psRNATarget
CT837862.1	ncRNA:24   UAGUAAUCAGAUGCAAAUUAUGAA   1   =|=|*||||||||||||||||=|| targets:955   GUUACUAGUCUACGUUUAAUAUUU   978 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA123J02, full insert sequence	NA	coding protein	psRNATarget
LQ236475.1	ncRNA:24   UAGUAAUCAGAUGCAAAUUAUGAA   1   =|*|||||||||=||||||||||* targets:232   GUAAUUAGUCUAUGUUUAAUACUC   255 Target Full Sequence	2.5	Sequence 2470 from Patent EP2985353	NA	coding protein	psRNATarget
HI404345.1	ncRNA:24   UAGUAAUCAGAUGCAAAUUAUGAA   1   =|*|||||||||=||||||||||* targets:232   GUAAUUAGUCUAUGUUUAAUACUC   255 Target Full Sequence	2.5	Sequence 2470 from Patent EP2074227	NA	coding protein	psRNATarget
JB164806.1	ncRNA:24   UAGUAAUCAGAUGCAAAUUAUGAA   1   =|*|||||||||=||||||||||* targets:232   GUAAUUAGUCUAUGUUUAAUACUC   255 Target Full Sequence	2.5	Sequence 2470 from Patent EP2559767	NA	coding protein	psRNATarget
AK071854.1	ncRNA:24   UAGUAAUCAGAUGCAAAUUAUGAA   1   ||=||||*|*|||||||||||||| targets:662   AUUAUUAUUAUACGUUUAAUACUU   685 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J023117P14, full insert sequence	NA	coding protein	psRNATarget
CT837676.1	ncRNA:24   UAGUAAUC-AGAUGCAAAUUAUGAA   1   =|=||||*-|||||||||||||||| targets:503   GUUAUUAAAUCUACGUUUAAUACUU   527 Target Full Sequence	3.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN028D22, full insert sequence	NA	coding protein	psRNATarget
AK288471.1	ncRNA:24   UAGUAAUCAGAUGCAAAUUAUGAA   1   =|=|||||*||||*|||||||||| targets:1822   GUUAUUAGACUACAUUUAAUACUU   1845 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090037K14, full insert sequence	NA	coding protein	psRNATarget