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BaseInfo

ncRNA ID	novel_osa_miR2700
Species	Oryza sativa
Class	miRNA
Genome position	Chr7:20010203-20010381 [-]
Reference genome	IRGSP-1.0
Source	SRR1849784
Length	24
Mature sequence(if miRNA)	1 - AAACGUUGGACACGGAAACUAGGG - 24
Stem-loop(if miRNA)	-  GAA              -                  AUAAUUUUU      UUUGUAUUUUUAUUGUU      -U     AA    AU   U  CU   UUUUCGUGUCCAAC UUUGACUGUCCGUCUUAU         UUAUAA                 GUUAGA  GAUAA  CAUG  UAA A  ||   |||||||||||||| ||||||||||||||||||         ||||||                 ||||||  |||||  ||||  |||  GG   AAAGGCACAGGUUG AAACUGGCAGGCAGAAUA         AAUAUU                 UAAUUU  CUGUU  GUGC  AUU U G  AUC              C                  AACUUUUUU      ------------UUUUU      UU     CA    GU   U
Stem-loop sequence	CUGAAUUUUCGUGUCCAACUUUGACUGUCCGUCUUAUAUAAUUUUUUUAUAAUUUGUAUUUUUAUUGUUGUUAGAUGAUAAAACAUGAUUAAUAUUUUAUGCGUGACUUGUCUUUUUAAUUUUUUUUAUAAUUUUUUCAAAUAAGACGGACGGUCAAACGUUGGACACGGAAACUAGGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015784718.1	ncRNA:24   GGGAUCAAAGGCACAGGUUGCAAA   1   ||||=||||||||||||||=|||| targets:1381   CCCUGGUUUCCGUGUCCAAUGUUU   1404 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group basic 7S globulin (LOC4326528), mRNA	basic 7S globulin(LOC4326528)	coding protein	psRNATarget
XM_015772621.1	ncRNA:24   GGGAUCAAAGGCACAGGUUGCAAA   1   |||||*|||||||||||||||||| targets:396   CCCUAAUUUCCGUGUCCAACGUUU   419 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4332894 (LOC4332894), mRNA	uncharacterized LOC4332894(LOC4332894)	coding protein	psRNATarget
XM_015759983.1	ncRNA:24   GGGAUC-AAAGGCACAGGUUGCAAA   1   ||||=|-|||||||||||||||||| targets:3508   CCCUGGGUUUCCGUGUCCAACGUUU   3532 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9270101 (LOC9270101), transcript variant X4, mRNA	uncharacterized LOC9270101(LOC9270101)	coding protein	psRNATarget
XM_015760576.1	ncRNA:24   GGGAUC-AAAGGCACAGGUUGCAAA   1   ||||||-||||=||||||||||||| targets:1942   CCCUAGGUUUCUGUGUCCAACGUUU   1966 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9272430 (LOC9272430), transcript variant X1, mRNA	uncharacterized LOC9272430(LOC9272430)	coding protein	psRNATarget
XM_015760578.1	ncRNA:24   GGGAUC-AAAGGCACAGGUUGCAAA   1   ||||||-||||=||||||||||||| targets:1858   CCCUAGGUUUCUGUGUCCAACGUUU   1882 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9272430 (LOC9272430), transcript variant X3, mRNA	uncharacterized LOC9272430(LOC9272430)	coding protein	psRNATarget
AK288529.1	ncRNA:24   GGGAUCAAAGGCACAGGUUGCAAA   1   ||||=|*||||||||||||||||| targets:64   CCCUGGCUUCCGUGUCCAACGUUU   87 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090044M17, full insert sequence	NA	coding protein	psRNATarget
CT828091.1	ncRNA:24   GGGAUCAAAGGCACAGGUUGCAAA   1   |||||*||||||||||=||||||| targets:1563   CCCUAAUUUCCGUGUCUAACGUUU   1586 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA128N06, full insert sequence	NA	coding protein	psRNATarget
AK242553.1	ncRNA:24   GGGAUCAAAGGCACAGGUUGCAAA   1   |=||=|||||||||*||||||||| targets:172   CUCUGGUUUCCGUGCCCAACGUUU   195 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J080319L22, full insert sequence	NA	coding protein	psRNATarget
AK288606.1	ncRNA:24   GGGAUC-AAAGGCACAGGUUGCAAA   1   ===|||-|||||||||||||||||| targets:2339   UUUUAGGUUUCCGUGUCCAACGUUU   2363 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090052P16, full insert sequence	NA	coding protein	psRNATarget
XM_015792475.1	ncRNA:24   GGGA-UCAAAGGCACAGGUUGCAAA   1   ||*|-|||||||||||||||||||| targets:2597   CCAUGAGUUUCCGUGUCCAACGUUU   2621 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group hydrophobic protein LTI6A (LOC4344028), transcript variant X4, mRNA	hydrophobic protein LTI6A(LOC4344028)	coding protein	psRNATarget
XM_015792473.1	ncRNA:24   GGGA-UCAAAGGCACAGGUUGCAAA   1   ||*|-|||||||||||||||||||| targets:2583   CCAUGAGUUUCCGUGUCCAACGUUU   2607 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group hydrophobic protein LTI6A (LOC4344028), transcript variant X2, mRNA	hydrophobic protein LTI6A(LOC4344028)	coding protein	psRNATarget
AK108063.1	ncRNA:24   GGGAUCAAAGGCACAGGUUGCAAA   1   |=||=||||=||||*||||||||| targets:1339   CUCUGGUUUUCGUGCCCAACGUUU   1362 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-138-B04, full insert sequence	NA	coding protein	psRNATarget
AK106724.1	ncRNA:24   GGGAUCAAAGGCACAGGUUGCAAA   1   ||||=*||||||||||||||*||| targets:659   CCCUGAUUUCCGUGUCCAACAUUU   682 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-114-G11, full insert sequence	NA	coding protein	psRNATarget
XM_015771325.1	ncRNA:24   GGGAUCAAAGGCACAGGUUGCAAA   1   |*||=||*|||||||||||||||| targets:1205   CACUGGUCUCCGUGUCCAACGUUU   1228 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group protein synthesis inhibitor I (LOC4324068), mRNA	protein synthesis inhibitor I(LOC4324068)	coding protein	psRNATarget
AK287584.1	ncRNA:24   GGGAUCAAAGGCACAGGUUGCAAA   1   |*||=||*|||||||||||||||| targets:1182   CACUGGUCUCCGUGUCCAACGUUU   1205 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J065044J10, full insert sequence	NA	coding protein	psRNATarget
AB051108.1	ncRNA:24   GGGAUCAAAGGCACAGGUUGCAAA   1   |*||=||*|||||||||||||||| targets:1177   CACUGGUCUCCGUGUCCAACGUUU   1200 Target Full Sequence	1.0	Oryza sativa RIP2 mRNA for ribosome inactivating protein 2, complete cds	NA	coding protein	psRNATarget
AK103707.1	ncRNA:24   GGGAUCAAAGGCACAGGUUGCAAA   1   |*||=||*|||||||||||||||| targets:1187   CACUGGUCUCCGUGUCCAACGUUU   1210 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J033136O07, full insert sequence	NA	coding protein	psRNATarget
CT832631.1	ncRNA:24   GGGAUCAAAGGCACAGGUUGCAAA   1   =*=*=||||||||||||||||||| targets:332   UGUGGGUUUCCGUGUCCAACGUUU   355 Target Full Sequence	0.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA021A12, full insert sequence	NA	coding protein	psRNATarget
CT832630.1	ncRNA:24   GGGAUCAAAGGCACAGGUUGCAAA   1   =*=*=||||||||||||||||||| targets:332   UGUGGGUUUCCGUGUCCAACGUUU   355 Target Full Sequence	0.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA020B12, full insert sequence	NA	coding protein	psRNATarget
XM_015776704.1	ncRNA:24   GGGAUCAAAGGCACAGGUUGCAAA   1   |||*=|||*|||||||=||||||| targets:1590   CCCGGGUUGCCGUGUCUAACGUUU   1613 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group glucan endo-1,3-beta-glucosidase 7 (LOC4332132), transcript variant X1, mRNA	glucan endo-1,3-beta-glucosidase 7(LOC4332132)	coding protein	psRNATarget
XM_015776705.1	ncRNA:24   GGGAUCAAAGGCACAGGUUGCAAA   1   |||*=|||*|||||||=||||||| targets:1584   CCCGGGUUGCCGUGUCUAACGUUU   1607 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group glucan endo-1,3-beta-glucosidase 7 (LOC4332132), transcript variant X2, mRNA	glucan endo-1,3-beta-glucosidase 7(LOC4332132)	coding protein	psRNATarget
XM_015776706.1	ncRNA:24   GGGAUCAAAGGCACAGGUUGCAAA   1   |||*=|||*|||||||=||||||| targets:1578   CCCGGGUUGCCGUGUCUAACGUUU   1601 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group glucan endo-1,3-beta-glucosidase 7 (LOC4332132), transcript variant X3, mRNA	glucan endo-1,3-beta-glucosidase 7(LOC4332132)	coding protein	psRNATarget
AK242028.1	ncRNA:24   GGGAUCAAAGGCACAGGUUGCAAA   1   |||*=|||*|||||||=||||||| targets:1467   CCCGGGUUGCCGUGUCUAACGUUU   1490 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J075115C11, full insert sequence	NA	coding protein	psRNATarget
AK107240.1	ncRNA:24   GGGAUCAAAGGCACAGGUUGCAAA   1   =***||||||=||||=|||||||| targets:1741   UGAGAGUUUCUGUGUUCAACGUUU   1764 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-125-F04, full insert sequence	NA	coding protein	psRNATarget
AK109737.1	ncRNA:24   GGGAUCAAAGGCACAGGUUGCAAA   1   =*=*||||||||||||||||*||| targets:1970   UGUGAGUUUCCGUGUCCAACAUUU   1993 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-146-C11, full insert sequence	NA	coding protein	psRNATarget
CT827991.1	ncRNA:24   GGGAUCAAAGGCACAGGUUGCAAA   1   *|=|=*||||||||||||||*||| targets:646   ACUUGAUUUCCGUGUCCAACAUUU   669 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA128H03, full insert sequence	NA	coding protein	psRNATarget
XM_015787998.1	ncRNA:24   GGGAUCAAAGGCACAGGUUGCAAA   1   =||*|*||||||*||||||||||| targets:1541   UCCGACUUUCCGCGUCCAACGUUU   1564 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group probable glycosyltransferase At5g25310 (LOC107278352), transcript variant X1, mRNA	probable glycosyltransferase At5g25310(LOC107278352)	coding protein	psRNATarget
CT836215.1	ncRNA:24   GGGAUCAAAGGCACAGGUUGCAAA   1   =||*|*||||||*||||||||||| targets:1010   UCCGACUUUCCGCGUCCAACGUUU   1033 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA223F11, full insert sequence	NA	coding protein	psRNATarget
XM_015787999.1	ncRNA:24   GGGAUCAAAGGCACAGGUUGCAAA   1   =||*|*||||||*||||||||||| targets:741   UCCGACUUUCCGCGUCCAACGUUU   764 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group probable glycosyltransferase At5g25310 (LOC107278352), transcript variant X2, mRNA	probable glycosyltransferase At5g25310(LOC107278352)	coding protein	psRNATarget
HI404421.1	ncRNA:24   GGGA-UCAAAGGCACAGGUUGCAAA   1   ||*|-||||||||||||||||*||* targets:18   CCAUGAGUUUCCGUGUCCAACCUUG   42 Target Full Sequence	2.5	Sequence 2546 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236551.1	ncRNA:24   GGGA-UCAAAGGCACAGGUUGCAAA   1   ||*|-||||||||||||||||*||* targets:18   CCAUGAGUUUCCGUGUCCAACCUUG   42 Target Full Sequence	2.5	Sequence 2546 from Patent EP2985353	NA	coding protein	psRNATarget
JB164882.1	ncRNA:24   GGGA-UCAAAGGCACAGGUUGCAAA   1   ||*|-||||||||||||||||*||* targets:18   CCAUGAGUUUCCGUGUCCAACCUUG   42 Target Full Sequence	2.5	Sequence 2546 from Patent EP2559767	NA	coding protein	psRNATarget
XM_015777215.1	ncRNA:24   GGGAUCAAAGGCACAGGUUGCAAA   1   |*=|=*||||*||||||||||||* targets:14   CGUUGAUUUCGGUGUCCAACGUUG   37 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4334678 (LOC4334678), transcript variant X1, mRNA	uncharacterized LOC4334678(LOC4334678)	coding protein	psRNATarget
XM_015777217.1	ncRNA:24   GGGAUCAAAGGCACAGGUUGCAAA   1   |*=|=*||||*||||||||||||* targets:17   CGUUGAUUUCGGUGUCCAACGUUG   40 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4334678 (LOC4334678), transcript variant X2, mRNA	uncharacterized LOC4334678(LOC4334678)	coding protein	psRNATarget