Search result

BaseInfo

ncRNA ID	novel_osa_miR2694
Species	Oryza sativa
Class	miRNA
Genome position	Chr6:25426928-25427071 [-]
Reference genome	IRGSP-1.0
Source	SRR1849784
Length	21
Mature sequence(if miRNA)	1 - UCAAGAACCGUAGAAUUACUC - 21
Stem-loop(if miRNA)	--GC                  A        C  G      UUUUUUC  U      -      -A -     G     AAUUUUACGGUUCUUGAG AGGUACCA GA GUACCA       UA UGUAAA UUUAGU  C CAUGA G     |||||||||||||||||| |||||||| || ||||||       || |||||| ||||||  | |||||     UUAAGAUGCCAAGAACUC UCCAUGGU CU CAUGGU       AU ACAUUU AAAUCA  G GUACU U CUCA                  C        A  G      -UUUUAA  C      U      AA A     A
Stem-loop sequence	GCAAUUUUACGGUUCUUGAGAAGGUACCACGAGGUACCAUUUUUUCUAUUGUAAAUUUAGUACCAUGAGGUAUCAUGAGAAACUAAAUUUUACACUAAAUUUUUGGUACGUCAUGGUACCUCCUCAAGAACCGUAGAAUUACUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK066407.1	ncRNA:21   CUCAUUAAGAUGCCAAGAACU   1   |||*||||=|||||||||||| targets:3813   GAGCAAUUUUACGGUUCUUGA   3833 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013063J08, full insert sequence	NA	coding protein	psRNATarget
AK288954.1	ncRNA:21   CUCAUUAAGAUGCCAAGAACU   1   |||*||||=|||||||||||| targets:3532   GAGCAAUUUUACGGUUCUUGA   3552 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090083O05, full insert sequence	NA	coding protein	psRNATarget
XM_015789833.1	ncRNA:21   CUCAUUAAGAUGCCAAGAACU   1   |||*|||||||||||||||*| targets:3209   GAGCAAUUCUACGGUUCUUAA   3229 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group receptor-like protein 12 (LOC4324067), mRNA	receptor-like protein 12(LOC4324067)	coding protein	psRNATarget
XM_015786027.1	ncRNA:21   CUCAUUAAGAUGCCAAGAACU   1   *||*|||||||||||*||||| targets:4597   AAGCAAUUCUACGGUCCUUGA   4617 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group ABC transporter C family member 8 (LOC9267441), mRNA	ABC transporter C family member 8(LOC9267441)	coding protein	psRNATarget