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BaseInfo

ncRNA ID novel_osa_miR2687
Species Oryza sativa
Class miRNA
Genome position Chr4:17792797-17792866 [+]
Reference genome IRGSP-1.0
Source SRR1849784
Length 22
Mature sequence(if miRNA) 49 - UUAAUCAUGGACUAAUUAGGCU - 70
Stem-loop(if miRNA) --        AGAC   AUUA     UGUGAGUUACUGU
  CCUAAUUA    GUC    GCACA             A
  ||||||||    |||    |||||
  GGAUUAAU    CAG    GUACU             G
UC        ----   ----     AAUUAGUAUUCAC
Stem-loop sequence CCUAAUUAAGACGUCAUUAGCACAUGUGAGUUACUGUAGCACUUAUGAUUAAUCAUGGACUAAUUAGGCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK071825.1
ncRNA:22   UCGGAUUAAUCAGGUACUAAUU   1
  |||||||||||||||||||||=
targets:1331   AGCCUAAUUAGUCCAUGAUUAG   1352

1.0 Oryza sativa Japonica Group cDNA clone:J023115H13, full insert sequence NA coding protein psRNATarget
AK064090.1
ncRNA:22   UCGGAUUAAUCAGGUACUAAUU   1
  |||||||||||||||||||||=
targets:1273   AGCCUAAUUAGUCCAUGAUUAG   1294

1.0 Oryza sativa Japonica Group cDNA clone:002-100-D06, full insert sequence NA coding protein psRNATarget
CT831729.1
ncRNA:22   UCGGAUUAAUCAGGUACUAAUU   1
  |||||||||||||||||||||=
targets:388   AGCCUAAUUAGUCCAUGAUUAG   409

1.0 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA117A02, full insert sequence NA coding protein psRNATarget
AK063539.1
ncRNA:22   UCGGAUUAAUCAGGUACUAAUU   1
  ||||||||||||=||||||||=
targets:2036   AGCCUAAUUAGUUCAUGAUUAG   2057

2.5 Oryza sativa Japonica Group cDNA clone:001-117-C04, full insert sequence NA coding protein psRNATarget
AK288167.1
ncRNA:22   UCGGAUUAAUCAGGUACUAAUU   1
  ||||||||||||||=||||||=
targets:1183   AGCCUAAUUAGUCCGUGAUUAG   1204

2.5 Oryza sativa Japonica Group cDNA, clone: J090002K22, full insert sequence NA coding protein psRNATarget
AK288305.1
ncRNA:22   UCGGAUUAAUCAGGUACUAAUU   1
  ||=||||||||||=|||||||=
targets:1603   AGUCUAAUUAGUCUAUGAUUAG   1624

2.5 Oryza sativa Japonica Group cDNA, clone: J090020F20, full insert sequence NA coding protein psRNATarget
AK072891.1
ncRNA:22   UCGGAUUAAUCAGGUACUAAUU   1
  ||*||||||||||||||||||=
targets:888   AGACUAAUUAGUCCAUGAUUAG   909

1.0 Oryza sativa Japonica Group cDNA clone:J023147C03, full insert sequence NA coding protein psRNATarget
AK288192.1
ncRNA:22   UCGGAUUAAUCAGGUACUAAUU   1
  |||*|||||||||||||||||=
targets:2197   AGCAUAAUUAGUCCAUGAUUAG   2218

2.0 Oryza sativa Japonica Group cDNA, clone: J090007C12, full insert sequence NA coding protein psRNATarget
CT834429.1
ncRNA:22   UCGGAUUAAUCAGGUACUAAUU   1
  ||||||||||*||||||||||=
targets:1378   AGCCUAAUUAAUCCAUGAUUAG   1399

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA203L19, full insert sequence NA coding protein psRNATarget
AK288638.1
ncRNA:22   UCGGAUUAAUCAGGUACUAAUU   1
  ||||||||||*||||||||||=
targets:315   AGCCUAAUUAAUCCAUGAUUAG   336

2.5 Oryza sativa Japonica Group cDNA, clone: J090055N09, full insert sequence NA coding protein psRNATarget
AK288202.1
ncRNA:22   UCGGAUUAAUCAGGUACUAAUU   1
  ||||||||||*||||||||||=
targets:1079   AGCCUAAUUAAUCCAUGAUUAG   1100

2.5 Oryza sativa Japonica Group cDNA, clone: J090008J03, full insert sequence NA coding protein psRNATarget
AK288164.1
ncRNA:22   UCGGAUUAAUCAGGUACUAAUU   1
  ||||||||||*||||||||||=
targets:1079   AGCCUAAUUAAUCCAUGAUUAG   1100

2.5 Oryza sativa Japonica Group cDNA, clone: J090002E02, full insert sequence NA coding protein psRNATarget
AK288576.1
ncRNA:22   UCGGAUUAAUCAGGUACUAAUU   1
  ||||||||||*||||||||||=
targets:1017   AGCCUAAUUAAUCCAUGAUUAG   1038

2.5 Oryza sativa Japonica Group cDNA, clone: J090049B14, full insert sequence NA coding protein psRNATarget
XM_015790304.1
ncRNA:22   UCGGAUUAAUCAGGUACUAAUU   1
  ||=||||||||*||||||||||
targets:745   AGUCUAAUUAGGCCAUGAUUAA   766

1.5 PREDICTED: Oryza sativa Japonica Group RING-H2 finger protein ATL45 (LOC4344335), mRNA RING-H2 finger protein ATL45(LOC4344335) coding protein psRNATarget
AK062636.1
ncRNA:22   UCGGAUUAAUCAGGUACUAAUU   1
  ||=||||||||*||||||||||
targets:737   AGUCUAAUUAGGCCAUGAUUAA   758

1.5 Oryza sativa Japonica Group cDNA clone:001-105-D02, full insert sequence NA coding protein psRNATarget
CT833754.1
ncRNA:22   UCGGAUUAAUCAGGUACUAAUU   1
  ||=||||||||*||||||||||
targets:739   AGUCUAAUUAGGCCAUGAUUAA   760

1.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI026E11, full insert sequence NA coding protein psRNATarget
HI404345.1
ncRNA:22   UCGGAUUAAUCAGGUACUAAUU   1
  ||||||||||*||||||||||=
targets:113   AGCCUAAUUAAUCCAUGAUUAG   134

2.5 Sequence 2470 from Patent EP2074227 NA coding protein psRNATarget
LQ236475.1
ncRNA:22   UCGGAUUAAUCAGGUACUAAUU   1
  ||||||||||*||||||||||=
targets:113   AGCCUAAUUAAUCCAUGAUUAG   134

2.5 Sequence 2470 from Patent EP2985353 NA coding protein psRNATarget
JB164806.1
ncRNA:22   UCGGAUUAAUCAGGUACUAAUU   1
  ||||||||||*||||||||||=
targets:113   AGCCUAAUUAAUCCAUGAUUAG   134

2.5 Sequence 2470 from Patent EP2559767 NA coding protein psRNATarget
LQ236362.1
ncRNA:22   UCGGAUUAAUCAGGUACUAAUU   1
  ||||||||||*||||||||||=
targets:110   AGCCUAAUUAAUCCAUGAUUAG   131

2.5 Sequence 2357 from Patent EP2985353 NA coding protein psRNATarget
HI404232.1
ncRNA:22   UCGGAUUAAUCAGGUACUAAUU   1
  ||||||||||*||||||||||=
targets:110   AGCCUAAUUAAUCCAUGAUUAG   131

2.5 Sequence 2357 from Patent EP2074227 NA coding protein psRNATarget
JB164693.1
ncRNA:22   UCGGAUUAAUCAGGUACUAAUU   1
  ||||||||||*||||||||||=
targets:110   AGCCUAAUUAAUCCAUGAUUAG   131

2.5 Sequence 2357 from Patent EP2559767 NA coding protein psRNATarget
AK121199.1
ncRNA:22   UCGGAUUAAUCAGGUACUAAUU   1
  |*|||||||||||=|||||||=
targets:1401   AACCUAAUUAGUCUAUGAUUAG   1422

2.5 Oryza sativa Japonica Group cDNA clone:J023087G06, full insert sequence NA coding protein psRNATarget
AK241212.1
ncRNA:22   UCGGAUUAAUCAGGUACUAAUU   1
  ||=|||||||*||||||||||=
targets:488   AGUCUAAUUAAUCCAUGAUUAG   509

2.5 Oryza sativa Japonica Group cDNA, clone: J065122M15, full insert sequence NA coding protein psRNATarget
CT833487.1
ncRNA:22   UCGGAUUAAUCAGGUACUAAUU   1
  ||=|||||||*||||||||||=
targets:840   AGUCUAAUUAAUCCAUGAUUAG   861

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI228J03, full insert sequence NA coding protein psRNATarget
CT830949.1
ncRNA:22   UCGGAUUAAUCAGGUACUAAUU   1
  ||=|||||||*||||||||||=
targets:834   AGUCUAAUUAAUCCAUGAUUAG   855

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI219H14, full insert sequence NA coding protein psRNATarget
CT831158.1
ncRNA:22   UCGGAUUAAUCAGGUACUAAUU   1
  ||=|||||||*||||||||||=
targets:653   AGUCUAAUUAAUCCAUGAUUAG   674

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA044E09, full insert sequence NA coding protein psRNATarget
AK289081.1
ncRNA:22   UCGGAUUAAUCAGGUACUAAUU   1
  =*||||||||||=||||||||=
targets:1313   GACCUAAUUAGUUCAUGAUUAG   1334

2.5 Oryza sativa Japonica Group cDNA, clone: J090095E02, full insert sequence NA coding protein psRNATarget
XM_015775655.1
ncRNA:22   UCGGAUUAAUCAGGUACUAAUU   1
  |*|||||*|||||||||||||=
targets:1871   AACCUAACUAGUCCAUGAUUAG   1892

2.0 PREDICTED: Oryza sativa Japonica Group 4-hydroxyphenylacetaldehyde oxime monooxygenase (LOC4334792), mRNA 4-hydroxyphenylacetaldehyde oxime monooxygenase(LOC4334792) coding protein psRNATarget
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