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BaseInfo

ncRNA ID	novel_osa_miR2686
Species	Oryza sativa
Class	miRNA
Genome position	Chr4:5870263-5870419 [-]
Reference genome	IRGSP-1.0
Source	SRR1849784;SRR1849787
Length	21
Mature sequence(if miRNA)	1 - CGAGAUACUUUUUGUUGGACC - 21
Stem-loop(if miRNA)	--              CA                               A     A  UG         GUUGG    GAU   UCCAACAAAAAGUA  UCGAGGUACCGGUAUCUCACGGUACCAAAUC UUUUC AU  UUGGAUCUA     ACAA   G   ||||||||||||||  ||||||||||||||||||||||||||||||| ||||| ||  |||||||||     ||||   AGGUUGUUUUUCAU  AGCUUCAUGGCUAUGGAGUGUCAUGGUUUAG AAAGG UA  AACCUAGAU     UGUU   A CC              AG                               C     C  GU         -----    AUA
Stem-loop sequence	UCCAACAAAAAGUACAUCGAGGUACCGGUAUCUCACGGUACCAAAUCAUUUUCAAUUGUUGGAUCUAGUUGGACAAGAUGAAUAUUGUUAGAUCCAAUGAUCGGAAACGAUUUGGUACUGUGAGGUAUCGGUACUUCGAGAUACUUUUUGUUGGACC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK063705.1	ncRNA:21   CCAGGUUGUUUUUCAUAGAGC   1   ||||||=|||||||||||||| targets:483   GGUCCAGCAAAAAGUAUCUCG   503 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:001-119-H03, full insert sequence	NA	coding protein	psRNATarget
EF626940.1	ncRNA:21   CCAGGUUGUUUUUCAUAGAGC   1   ||||||=|||||||||||||| targets:989   GGUCCAGCAAAAAGUAUCUCG   1009 Target Full Sequence	1.0	Oryza sativa (indica cultivar-group) WIP4 (WIP4) mRNA, complete cds	NA	coding protein	psRNATarget
XM_015755547.1	ncRNA:21   CCAGGUUGUUUUUCAUAGAGC   1   ||||||=|||||||||||||| targets:1464   GGUCCAGCAAAAAGUAUCUCG   1484 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group zinc finger protein WIP2 (LOC4347420), mRNA	zinc finger protein WIP2(LOC4347420)	coding protein	psRNATarget
XM_015779655.1	ncRNA:21   CCAGGUUGUUUUUCAUAGAGC   1   |||||||=||||||||||||| targets:1463   GGUCCAAUAAAAAGUAUCUCG   1483 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107280684 (LOC107280684), transcript variant X1, mRNA	uncharacterized LOC107280684(LOC107280684)	coding protein	psRNATarget
JB164580.1	ncRNA:21   CCAGGUUGUUUUUCAUAGAGC   1   ||||=||||=||||||||||| targets:10   GGUCUAACAGAAAGUAUCUCG   30 Target Full Sequence	2.5	Sequence 2244 from Patent EP2559767	NA	coding protein	psRNATarget
HI404119.1	ncRNA:21   CCAGGUUGUUUUUCAUAGAGC   1   ||||=||||=||||||||||| targets:10   GGUCUAACAGAAAGUAUCUCG   30 Target Full Sequence	2.5	Sequence 2244 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236249.1	ncRNA:21   CCAGGUUGUUUUUCAUAGAGC   1   ||||=||||=||||||||||| targets:10   GGUCUAACAGAAAGUAUCUCG   30 Target Full Sequence	2.5	Sequence 2244 from Patent EP2985353	NA	coding protein	psRNATarget
XM_015755454.1	ncRNA:21   CCAGGUUGUUUUU-CAUAGAGC   1   |||||||||||||-|||||||| targets:993   GGUCCAACAAAAAAGUAUCUCG   1014 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4346980 (LOC4346980), mRNA	uncharacterized LOC4346980(LOC4346980)	coding protein	psRNATarget
AK241559.1	ncRNA:21   CCAGGUUGUUUUU-CAUAGAGC   1   |||||||||||||-|||||||| targets:780   GGUCCAACAAAAAAGUAUCUCG   801 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J065178L07, full insert sequence	NA	coding protein	psRNATarget
LQ235663.1	ncRNA:21   CCAGGUUGUUUUUCAUAGAGC   1   ||||||||||||||||*|||| targets:9   GGUCCAACAAAAAGUACCUCG   29 Target Full Sequence	1.5	Sequence 1658 from Patent EP2985353	NA	coding protein	psRNATarget
JB163994.1	ncRNA:21   CCAGGUUGUUUUUCAUAGAGC   1   ||||||||||||||||*|||| targets:9   GGUCCAACAAAAAGUACCUCG   29 Target Full Sequence	1.5	Sequence 1658 from Patent EP2559767	NA	coding protein	psRNATarget
HI403533.1	ncRNA:21   CCAGGUUGUUUUUCAUAGAGC   1   ||||||||||||||||*|||| targets:9   GGUCCAACAAAAAGUACCUCG   29 Target Full Sequence	1.5	Sequence 1658 from Patent EP2074227	NA	coding protein	psRNATarget
JB164999.1	ncRNA:21   CCAGGUUGUUUUUCAUAGAGC   1   |||||||||||||*||||||| targets:10   GGUCCAACAAAAAAUAUCUCG   30 Target Full Sequence	1.5	Sequence 2663 from Patent EP2559767	NA	coding protein	psRNATarget
HI404538.1	ncRNA:21   CCAGGUUGUUUUUCAUAGAGC   1   |||||||||||||*||||||| targets:10   GGUCCAACAAAAAAUAUCUCG   30 Target Full Sequence	1.5	Sequence 2663 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236668.1	ncRNA:21   CCAGGUUGUUUUUCAUAGAGC   1   |||||||||||||*||||||| targets:10   GGUCCAACAAAAAAUAUCUCG   30 Target Full Sequence	1.5	Sequence 2663 from Patent EP2985353	NA	coding protein	psRNATarget
XM_015786123.1	ncRNA:21   CCAGGUUGUUUUUCAUAGAGC   1   ||||||||||||||||*|||| targets:619   GGUCCAACAAAAAGUAACUCG   639 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4340617 (LOC4340617), mRNA	uncharacterized LOC4340617(LOC4340617)	coding protein	psRNATarget
AK100297.1	ncRNA:21   CCAGGUUGUUUUUCAUAGAGC   1   |||||||||||||*||||||| targets:1291   GGUCCAACAAAAAUUAUCUCG   1311 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023077B14, full insert sequence	NA	coding protein	psRNATarget
XM_015793616.1	ncRNA:21   CCAGGUUGUUUUUCAUAGAGC   1   |||||||||||||*||||||| targets:1466   GGUCCAACAAAAAUUAUCUCG   1486 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group probable auxin efflux carrier component 4 (LOC4346116), mRNA	probable auxin efflux carrier component 4(LOC4346116)	coding protein	psRNATarget
AK287529.1	ncRNA:21   CCAGGUUGUUUUUCAUAGAGC   1   ||||||||||||||||*|||| targets:130   GGUCCAACAAAAAGUAACUCG   150 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J065001C03, full insert sequence	NA	coding protein	psRNATarget
AK240791.1	ncRNA:21   CCAGGUUGUUUUUCAUAGAGC   1   ||||||||||||||||*|||| targets:130   GGUCCAACAAAAAGUAACUCG   150 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J065001C03, full insert sequence	NA	coding protein	psRNATarget
AK103106.1	ncRNA:21   CCAGGUUGUUUUUCAUAGAGC   1   |||||||=||||||||*|||| targets:1436   GGUCCAAUAAAAAGUACCUCG   1456 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033118O22, full insert sequence	NA	coding protein	psRNATarget
XM_015765802.1	ncRNA:21   CCAGGUUGUUUUUCAUAGAGC   1   |||||||=||||||||*|||| targets:1435   GGUCCAAUAAAAAGUACCUCG   1455 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group polygalacturonase (LOC4326679), mRNA	polygalacturonase(LOC4326679)	coding protein	psRNATarget
XM_015790062.1	ncRNA:21   CCAGGUUGUUUUUCAUAGAGC   1   |||=||||||||||||||*|| targets:2277   GGUUCAACAAAAAGUAUCCCG   2297 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group L-type lectin-domain containing receptor kinase IV.1 (LOC9268564), mRNA	L-type lectin-domain containing receptor kinase IV.1(LOC9268564)	coding protein	psRNATarget
AK108234.1	ncRNA:21   CCAGGUUGUUUUUCAUAGAGC   1   |*||=|=|||||||||||||| targets:419   GAUCUAGCAAAAAGUAUCUCG   439 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:002-140-G06, full insert sequence	NA	coding protein	psRNATarget
XM_015775554.1	ncRNA:21   CCAGGUU-GUUUUUCAUAGAGC   1   **|||||-|||||||||||||* targets:2399   AUUCCAAGCAAAAAGUAUCUCU   2420 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4331350 (LOC4331350), transcript variant X3, mRNA	uncharacterized LOC4331350(LOC4331350)	coding protein	psRNATarget
XM_015775555.1	ncRNA:21   CCAGGUU-GUUUUUCAUAGAGC   1   **|||||-|||||||||||||* targets:2999   AUUCCAAGCAAAAAGUAUCUCU   3020 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4331350 (LOC4331350), transcript variant X4, mRNA	uncharacterized LOC4331350(LOC4331350)	coding protein	psRNATarget
XM_015775552.1	ncRNA:21   CCAGGUU-GUUUUUCAUAGAGC   1   **|||||-|||||||||||||* targets:3020   AUUCCAAGCAAAAAGUAUCUCU   3041 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4331350 (LOC4331350), transcript variant X1, mRNA	uncharacterized LOC4331350(LOC4331350)	coding protein	psRNATarget
XM_015775553.1	ncRNA:21   CCAGGUU-GUUUUUCAUAGAGC   1   **|||||-|||||||||||||* targets:3054   AUUCCAAGCAAAAAGUAUCUCU   3075 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4331350 (LOC4331350), transcript variant X2, mRNA	uncharacterized LOC4331350(LOC4331350)	coding protein	psRNATarget
AB462324.1	ncRNA:21   CCAGGUUGUUUUUCAUAGAGC   1   ***=||||||||||||||||* targets:1183   UCCUCAACAAAAAGUAUCUCA   1203 Target Full Sequence	3.0	Oryza sativa Japonica Group Pikm1-TS mRNA for NBS-LRR class disease resistance protein, complete cds	NA	coding protein	psRNATarget
AB616658.1	ncRNA:21   CCAGGUUGUUUUUCAUAGAGC   1   ***=||||||||||||||||* targets:1183   UCCUCAACAAAAAGUAUCUCA   1203 Target Full Sequence	3.0	Oryza sativa Japonica Group Pik1-KA gene for NBS-LRR class disease resistance protein, partial cds, cultivar: Kanto51	NA	coding protein	psRNATarget