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BaseInfo

ncRNA ID	novel_osa_miR2685
Species	Oryza sativa
Class	miRNA
Genome position	Chr3:10216653-10216865 [+]
Reference genome	IRGSP-1.0
Source	SRR1849784
Length	22
Mature sequence(if miRNA)	192 - UUUAGGACGGAGGAAGUAGCUC - 213
Stem-loop(if miRNA)	--AA    A               AAA       AUAGAUAUCCGUGCUUAAUGUUUGACCGUCCGUCUUAUUUGAAAAAAUUUAAAAAUAUUUAGUCACACAUAAAG     UACU CCUCCGUCCUAAAAU   UACAUAU                                                                          U     |||| |||||||||||||||   |||||||     AUGA GGAGGCAGGAUUUUA   AGUUGCA                                                                          A CUCG    A               ---       AACUGGCAAGCAGAAUAAACUUUAAAAAAAUACUAAUCAUAAAAAUAACGAUAAUCUACUAUUUUGUAAUUAUC
Stem-loop sequence	AAUACUACCUCCGUCCUAAAAUAAAUACAUAUAUAGAUAUCCGUGCUUAAUGUUUGACCGUCCGUCUUAUUUGAAAAAAUUUAAAAAUAUUUAGUCACACAUAAAGUACUAUUAAUGUUUUAUCAUCUAAUAGCAAUAAAAAUACUAAUCAUAAAAAAAUUUCAAAUAAGACGAACGGUCAAACGUUGAAUUUUAGGACGGAGGAAGUAGCUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK121172.1	ncRNA:22   CUCGAUGAAGGAGGCAGGAUUU   1   *|||||||*||||||||||||| targets:247   UAGCUACUCCCUCCGUCCUAAA   268 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J023081I09, full insert sequence	NA	coding protein	psRNATarget
XM_015788811.1	ncRNA:22   CUCGAUGAAGGAGGCAGGAUUU   1   |**|||||*=|||||||||||| targets:921   GUACUACUCUCUCCGUCCUAAA   942 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107277009 (LOC107277009), transcript variant X1, mRNA	uncharacterized LOC107277009(LOC107277009)	coding protein	psRNATarget
XM_015757380.1	ncRNA:22   CUCGAUGAAGGAGGCAGGAUUU   1   *|||||||*||||||||=|||| targets:2326   UAGCUACUCCCUCCGUCUUAAA   2347 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group protein DETOXIFICATION 49-like (LOC107278980), mRNA	protein DETOXIFICATION 49-like(LOC107278980)	coding protein	psRNATarget
AK067087.1	ncRNA:22   CUCGAUGAAGGAGGCAGGAUUU   1   ||*|||||||*||||||||||| targets:3680   GACCUACUUCAUCCGUCCUAAA   3701 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013095A19, full insert sequence	NA	coding protein	psRNATarget
XM_015777255.1	ncRNA:22   CUCGAUGAAGGAGGCAGGAUUU   1   **||||||*||||||||||||| targets:72   AUGCUACUACCUCCGUCCUAAA   93 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group homologous-pairing protein 2 homolog (LOC107278587), mRNA	homologous-pairing protein 2 homolog(LOC107278587)	coding protein	psRNATarget
CT836306.1	ncRNA:22   CUCGAUGAAGGAGGCAGGAUUU   1   |***|||||||||||||||||| targets:718   GUCAUACUUCCUCCGUCCUAAA   739 Target Full Sequence	1.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN025E20, full insert sequence	NA	coding protein	psRNATarget
XM_015789792.1	ncRNA:22   CUCGAUGAAGGAGGCAGGAUUU   1   *|*=|||||||||||||=|||| targets:2120   AAAUUACUUCCUCCGUCUUAAA   2141 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group anthocyanidin 3-O-glucosyltransferase 2 (LOC4343322), mRNA	anthocyanidin 3-O-glucosyltransferase 2(LOC4343322)	coding protein	psRNATarget
AK072115.1	ncRNA:22   CUCGAUGAAGGAGGCAGGAUUU   1   ||*|||||*|||||||=||||| targets:2154   GAACUACUCCCUCCGUUCUAAA   2175 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013123M19, full insert sequence	NA	coding protein	psRNATarget
XM_015761638.1	ncRNA:22   CUCGAUGAAGGAGGCAGGAUUU   1   *|||||||*|||||||||*||| targets:3859   UAGCUACUCCCUCCGUCCCAAA   3880 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group putative receptor protein kinase ZmPK1 (LOC107278048), mRNA	putative receptor protein kinase ZmPK1(LOC107278048)	coding protein	psRNATarget
AK288309.1	ncRNA:22   CUCGAUGAAGGAGGCAGGAUUU   1   *|||||||*|||||*||||||| targets:132   UAGCUACUCCCUCCAUCCUAAA   153 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090020H08, full insert sequence	NA	coding protein	psRNATarget
XM_015762747.1	ncRNA:22   CUCGAUGAAGGAGGCAGGAUUU   1   ***|||||||||||||||*||| targets:1696   UUACUACUUCCUCCGUCCCAAA   1717 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group probable glycerol-3-phosphate acyltransferase 3 (LOC4352530), mRNA	probable glycerol-3-phosphate acyltransferase 3(LOC4352530)	coding protein	psRNATarget
XM_015776430.1	ncRNA:22   CU--CGAUGAAGGAGGCAGGAUUU   1   ||--|*||||*||||||||||||| targets:1032   GACUGGUACUCCCUCCGUCCUAAA   1055 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4327776 (LOC4327776), mRNA	uncharacterized LOC4327776(LOC4327776)	coding protein	psRNATarget
XM_015757779.1	ncRNA:22   CUCGAUGAAGGAGGCAGGAUUU   1   *|*|||||*=|||||||||||| targets:1828   AACCUACUAUCUCCGUCCUAAA   1849 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group UDP-glycosyltransferase 73C1 (LOC4348200), mRNA	UDP-glycosyltransferase 73C1(LOC4348200)	coding protein	psRNATarget
CT832702.1	ncRNA:22   CUCGAUGAAGGAGGCAGGAUUU   1   ***|||||*|||||||=||||| targets:1285   UUACUACUCCCUCCGUUCUAAA   1306 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN035G10, full insert sequence	NA	coding protein	psRNATarget
CT828824.1	ncRNA:22   CUCGAUGAAGGAGGCAGGAUUU   1   ||**||||*||||||||||||| targets:1038   GAUGUACUACCUCCGUCCUAAA   1059 Target Full Sequence	2.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA109D05, full insert sequence	NA	coding protein	psRNATarget
XM_015794010.1	ncRNA:22   CUCGAUGAAGGAGGCAGGAUUU   1   ***=||||||||||||||*||| targets:2183   UCCUUACUUCCUCCGUCCCAAA   2204 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group AUGMIN subunit 8 (LOC4345694), mRNA	AUGMIN subunit 8(LOC4345694)	coding protein	psRNATarget
XM_015789539.1	ncRNA:22   CUCGAUGAAGGAGGCAGGAUUU   1   |**|||=|||||||||||*||| targets:2531   GUACUAUUUCCUCCGUCCCAAA   2552 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group DIMBOA UDP-glucosyltransferase BX9 (LOC4342810), mRNA	DIMBOA UDP-glucosyltransferase BX9(LOC4342810)	coding protein	psRNATarget
XM_015775993.1	ncRNA:22   CUCGAUGAAGGAGGCAGGAUUU   1   ||**||||*||||||||||||| targets:1918   GAUGUACUACCUCCGUCCUAAA   1939 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group CBL-interacting protein kinase 10 (LOC4332786), transcript variant X2, mRNA	CBL-interacting protein kinase 10(LOC4332786)	coding protein	psRNATarget
XM_015778831.1	ncRNA:22   CUCGAUGAAGGAGGCAGGAUUU   1   ***=||||*||||||||||||| targets:3095   CUAUUACUACCUCCGUCCUAAA   3116 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4336666 (LOC4336666), mRNA	uncharacterized LOC4336666(LOC4336666)	coding protein	psRNATarget
XM_015775992.1	ncRNA:22   CUCGAUGAAGGAGGCAGGAUUU   1   ||**||||*||||||||||||| targets:2872   GAUGUACUACCUCCGUCCUAAA   2893 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group CBL-interacting protein kinase 10 (LOC4332786), transcript variant X1, mRNA	CBL-interacting protein kinase 10(LOC4332786)	coding protein	psRNATarget
AK066541.1	ncRNA:22   CUCGAUGAAGGAGGCAGGAUUU   1   ||**||||*||||||||||||| targets:2869   GAUGUACUACCUCCGUCCUAAA   2890 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J013070E20, full insert sequence	NA	coding protein	psRNATarget
HI403910.1	ncRNA:22   CUCGAUGAAGGAGGCAGGAUUU   1   **||||||*|||||||||*||| targets:1   AUGCUACUACCUCCGUCCCAAA   22 Target Full Sequence	2.5	Sequence 2035 from Patent EP2074227	NA	coding protein	psRNATarget
JB164371.1	ncRNA:22   CUCGAUGAAGGAGGCAGGAUUU   1   **||||||*|||||||||*||| targets:1   AUGCUACUACCUCCGUCCCAAA   22 Target Full Sequence	2.5	Sequence 2035 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236040.1	ncRNA:22   CUCGAUGAAGGAGGCAGGAUUU   1   **||||||*|||||||||*||| targets:1   AUGCUACUACCUCCGUCCCAAA   22 Target Full Sequence	2.5	Sequence 2035 from Patent EP2985353	NA	coding protein	psRNATarget
JB164437.1	ncRNA:22   CUCGAUGAAGGAGGCAGGAUUU   1   **||||||*|||||*||||||| targets:221   UUGCUACUCCCUCCAUCCUAAA   242 Target Full Sequence	2.5	Sequence 2101 from Patent EP2559767	NA	coding protein	psRNATarget
HI403976.1	ncRNA:22   CUCGAUGAAGGAGGCAGGAUUU   1   **||||||*|||||*||||||| targets:221   UUGCUACUCCCUCCAUCCUAAA   242 Target Full Sequence	2.5	Sequence 2101 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236106.1	ncRNA:22   CUCGAUGAAGGAGGCAGGAUUU   1   **||||||*|||||*||||||| targets:221   UUGCUACUCCCUCCAUCCUAAA   242 Target Full Sequence	2.5	Sequence 2101 from Patent EP2985353	NA	coding protein	psRNATarget
XM_015782537.1	ncRNA:22   CUCGAUGAAGGAGGCAGGAUUU   1   **||||||*|||||||||*||| targets:2432   AUGCUACUACCUCCGUCCCAAA   2453 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4338795 (LOC4338795), mRNA	uncharacterized LOC4338795(LOC4338795)	coding protein	psRNATarget
AK102320.1	ncRNA:22   CUCGAUGAAGGAGGCAGGAUUU   1   **||||||*|||||||||*||| targets:2491   AUGCUACUACCUCCGUCCCAAA   2512 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033090I04, full insert sequence	NA	coding protein	psRNATarget
CT835530.1	ncRNA:22   CUCGAUGAAGGAGGCAGGAUUU   1   *=**||||*||||||||||||| targets:839   UGUAUACUCCCUCCGUCCUAAA   860 Target Full Sequence	2.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA055H10, full insert sequence	NA	coding protein	psRNATarget
AK062145.1	ncRNA:22   CUCGAUGAAGGAGGCAGGAUUU   1   ****||||*||||||||||||| targets:112   UCAAUACUACCUCCGUCCUAAA   133 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:001-045-G09, full insert sequence	NA	coding protein	psRNATarget
XM_015758473.1	ncRNA:22   CUCGAUGAAGGAGGCAGGAUUU   1   *|**||||*||||||||||||| targets:1370   UAUAUACUCCCUCCGUCCUAAA   1391 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group GDSL esterase/lipase At1g28590 (LOC4348539), mRNA	GDSL esterase/lipase At1g28590(LOC4348539)	coding protein	psRNATarget