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BaseInfo

ncRNA ID	novel_osa_miR2684
Species	Oryza sativa
Class	miRNA
Genome position	Chr3:149851-149897 [-]
Reference genome	IRGSP-1.0
Source	SRR1849784
Length	23
Mature sequence(if miRNA)	25 - UUCUAGUAUGAUGAAUCUGGACU - 47
Stem-loop(if miRNA)	--        UG UG       A   UUCUAGUA  A  AAUCUGG C   ||||||||  |  ||||||| U   AGGAUCAU  U  UUAGACC G AU        GU GU       U
Stem-loop sequence	UUCUAGUAUGAUGAAUCUGGACUGUCCAGAUUUGUUGUACUAGGAUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288796.1	ncRNA:23   UCAGGUCUAAGUAGUAUGAUCUU   1   *||||||||||||=||||||||| targets:591   UGUCCAGAUUCAUUAUACUAGAA   613 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090070F05, full insert sequence	NA	coding protein	psRNATarget
AK288458.1	ncRNA:23   UCAGGUCUAAGUAGUAUGAUCUU   1   *||=|||||||||=||||||||| targets:1356   UGUUCAGAUUCAUUAUACUAGAA   1378 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090035E13, full insert sequence	NA	coding protein	psRNATarget
AK063369.1	ncRNA:23   UCAGGUCUAAGUAGUAUGAUCUU   1   |*||=||||||||=||||||||| targets:1010   AUUCUAGAUUCAUUAUACUAGAA   1032 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-114-E01, full insert sequence	NA	coding protein	psRNATarget
XM_015794212.1	ncRNA:23   UCAGGUCUAAGUAGUAUGAUCUU   1   |*||=||||||||=||||||||| targets:1121   AUUCUAGAUUCAUUAUACUAGAA   1143 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4325579 (LOC4325579), mRNA	uncharacterized LOC4325579(LOC4325579)	coding protein	psRNATarget
AK288908.1	ncRNA:23   UCAGGUCUAAGUAGUAUGAUCUU   1   **||||*|||||||=|||||||| targets:910   UAUCCAAAUUCAUCGUACUAGAA   932 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090081D16, full insert sequence	NA	coding protein	psRNATarget
AK288602.1	ncRNA:23   UCAGGUCUAAGUAGUAUGAUCUU   1   **||||*||||||=||||||||| targets:808   UAUCCACAUUCAUUAUACUAGAA   830 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090052H23, full insert sequence	NA	coding protein	psRNATarget
XM_015794437.1	ncRNA:23   UCAGGUCUAAGUAGUAUGAUCUU   1   |*|||||||*||||||||*|||| targets:4100   AAUCCAGAUGCAUCAUACCAGAA   4122 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group histone-lysine N-methyltransferase ATXR3 (LOC4344819), mRNA	histone-lysine N-methyltransferase ATXR3(LOC4344819)	coding protein	psRNATarget