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BaseInfo

ncRNA ID	novel_osa_miR2677
Species	Oryza sativa
Class	miRNA
Genome position	Chr2:35714967-35715016 [+]
Reference genome	IRGSP-1.0
Source	SRR1849784;SRR2040407
Length	24
Mature sequence(if miRNA)	27 - AUAUCCAGAUUCGUUGUACUAGGA - 50
Stem-loop(if miRNA)	--G        UA      A   GG    UAGUACAA  AAUUUG AUA  A    ||||||||  |||||| |||    AUCAUGUU  UUAGAC UAU  G AGG        GC      C   AU
Stem-loop sequence	GUAGUACAAUAAAUUUGAAUAGGAGUAUAUCCAGAUUCGUUGUACUAGGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ236085.1	ncRNA:24   AGGAUCAUGUUGCUUAGACCUAUA   1   *||||||||||||||||||||||* targets:36   ACCUAGUACAACGAAUCUGGAUAG   59 Target Full Sequence	1.0	Sequence 2080 from Patent EP2985353	NA	coding protein	psRNATarget
JB164416.1	ncRNA:24   AGGAUCAUGUUGCUUAGACCUAUA   1   *||||||||||||||||||||||* targets:36   ACCUAGUACAACGAAUCUGGAUAG   59 Target Full Sequence	1.0	Sequence 2080 from Patent EP2559767	NA	coding protein	psRNATarget
HI403955.1	ncRNA:24   AGGAUCAUGUUGCUUAGACCUAUA   1   *||||||||||||||||||||||* targets:36   ACCUAGUACAACGAAUCUGGAUAG   59 Target Full Sequence	1.0	Sequence 2080 from Patent EP2074227	NA	coding protein	psRNATarget
XM_015784597.1	ncRNA:24   AGGAUCAUGUUGCUUAGACCUAUA   1   *||||||||||||||||||||||* targets:2390   ACCUAGUACAACGAAUCUGGAUAG   2413 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At3g62470, mitochondrial (LOC4338514), transcript variant X4, mRNA	pentatricopeptide repeat-containing protein At3g62470, mitochondrial(LOC4338514)	coding protein	psRNATarget
XM_015784596.1	ncRNA:24   AGGAUCAUGUUGCUUAGACCUAUA   1   *||||||||||||||||||||||* targets:2390   ACCUAGUACAACGAAUCUGGAUAG   2413 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At3g62470, mitochondrial (LOC4338514), transcript variant X3, mRNA	pentatricopeptide repeat-containing protein At3g62470, mitochondrial(LOC4338514)	coding protein	psRNATarget
XM_015784593.1	ncRNA:24   AGGAUCAUGUUGCUUAGACCUAUA   1   *||||||||||||||||||||||* targets:2390   ACCUAGUACAACGAAUCUGGAUAG   2413 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At3g62470, mitochondrial (LOC4338514), transcript variant X1, mRNA	pentatricopeptide repeat-containing protein At3g62470, mitochondrial(LOC4338514)	coding protein	psRNATarget
XM_015784595.1	ncRNA:24   AGGAUCAUGUUGCUUAGACCUAUA   1   *||||||||||||||||||||||* targets:2390   ACCUAGUACAACGAAUCUGGAUAG   2413 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At3g62470, mitochondrial (LOC4338514), transcript variant X2, mRNA	pentatricopeptide repeat-containing protein At3g62470, mitochondrial(LOC4338514)	coding protein	psRNATarget
AK063452.1	ncRNA:24   AGGAUCAUGUUGCUUAGACCUAUA   1   |||||||||*|=|||||||||||| targets:121   UCCUAGUACUAUGAAUCUGGAUAU   144 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-115-G03, full insert sequence	NA	coding protein	psRNATarget
AK288631.1	ncRNA:24   AGGAUCAUGUUGCUUAGACCUAUA   1   |=|||||||*|||||||||||||| targets:4125   UUCUAGUACUACGAAUCUGGAUAU   4148 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090055C12, full insert sequence	NA	coding protein	psRNATarget
AK111992.1	ncRNA:24   AGGAUCAUGUUGCUUAGACCUAUA   1   |||||||||||||||||||||*|* targets:706   UCCUAGUACAACGAAUCUGGACAG   729 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-033-B02, full insert sequence	NA	coding protein	psRNATarget
XM_015789120.1	ncRNA:24   AGGAUCAUGUUGCUUAGACCUAUA   1   |||||||||||||||||||||*|* targets:1267   UCCUAGUACAACGAAUCUGGACAG   1290 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group mitochondrial ubiquitin ligase activator of NFKB 1 (LOC4344112), transcript variant X2, mRNA	mitochondrial ubiquitin ligase activator of NFKB 1(LOC4344112)	coding protein	psRNATarget
XM_015789119.1	ncRNA:24   AGGAUCAUGUUGCUUAGACCUAUA   1   |||||||||||||||||||||*|* targets:1362   UCCUAGUACAACGAAUCUGGACAG   1385 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group mitochondrial ubiquitin ligase activator of NFKB 1 (LOC4344112), transcript variant X1, mRNA	mitochondrial ubiquitin ligase activator of NFKB 1(LOC4344112)	coding protein	psRNATarget
AK102332.1	ncRNA:24   AGGAUCAUGUUGCUUAGACCUAUA   1   |||||||||||||||||||||*|* targets:1766   UCCUAGUACAACGAAUCUGGACAG   1789 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033090N02, full insert sequence	NA	coding protein	psRNATarget
HI403740.1	ncRNA:24   AGGAUCAUGUUGCUUAGACCUAUA   1   ||||||*|=||||||||||||||* targets:34   UCCUAGGAUAACGAAUCUGGAUAG   57 Target Full Sequence	3.0	Sequence 1865 from Patent EP2074227	NA	coding protein	psRNATarget
JB164201.1	ncRNA:24   AGGAUCAUGUUGCUUAGACCUAUA   1   ||||||*|=||||||||||||||* targets:34   UCCUAGGAUAACGAAUCUGGAUAG   57 Target Full Sequence	3.0	Sequence 1865 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235870.1	ncRNA:24   AGGAUCAUGUUGCUUAGACCUAUA   1   ||||||*|=||||||||||||||* targets:34   UCCUAGGAUAACGAAUCUGGAUAG   57 Target Full Sequence	3.0	Sequence 1865 from Patent EP2985353	NA	coding protein	psRNATarget
CT834276.1	ncRNA:24   AGGAUCAUGUUGCUUAGACCUAUA   1   |=|||||||||||||*|||||||* targets:1792   UUCUAGUACAACGAACCUGGAUAG   1815 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA110F09, full insert sequence	NA	coding protein	psRNATarget
AK071898.1	ncRNA:24   AGGAUCAUGUUGCUUAGACCUAUA   1   |=*||||||||||||||||||||* targets:2687   UUAUAGUACAACGAAUCUGGAUAG   2710 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J013059B05, full insert sequence	NA	coding protein	psRNATarget
XM_015764610.1	ncRNA:24   AGGAUCAUGUUGCUUAGACCUAUA   1   |=*||||||||||||||||||||* targets:2703   UUAUAGUACAACGAAUCUGGAUAG   2726 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group BTB/POZ domain-containing protein NPY4 (LOC4352652), mRNA	BTB/POZ domain-containing protein NPY4(LOC4352652)	coding protein	psRNATarget
AK288796.1	ncRNA:24   AGGAUCAUGUUGCUUAGACCUAUA   1   |*||||||=||||||||||||||* targets:375   UACUAGUAUAACGAAUCUGGAUAA   398 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090070F05, full insert sequence	NA	coding protein	psRNATarget
AK288458.1	ncRNA:24   AGGAUCAUGUUGCUUAGACCUAUA   1   ||*||||||||=|||||||||||* targets:356   UCAUAGUACAAUGAAUCUGGAUAG   379 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090035E13, full insert sequence	NA	coding protein	psRNATarget
CT830398.1	ncRNA:24   AGGAUCAUGUUGCUUAGACCUAUA   1   |==|||||=*|||||||||||||| targets:357   UUUUAGUAUUACGAAUCUGGAUAU   380 Target Full Sequence	2.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA041E02, full insert sequence	NA	coding protein	psRNATarget
AK242875.1	ncRNA:24   AGGAUCAUGUUGCUUAGACCUAUA   1   |==||||||*|||||||||||||* targets:1782   UUUUAGUACCACGAAUCUGGAUAA   1805 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090077K21, full insert sequence	NA	coding protein	psRNATarget
AK064924.1	ncRNA:24   AGGAUCAUGUUGCUUAGACCUAUA   1   ||=||*|||*|||||||||||||| targets:2016   UCUUAAUACUACGAAUCUGGAUAU   2039 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J013000N15, full insert sequence	NA	coding protein	psRNATarget
AK119748.1	ncRNA:24   AGGAUCAUGUUGCUUAGACCUAUA   1   ||=||*|||*|||||||||||||| targets:2193   UCUUAAUACUACGAAUCUGGAUAU   2216 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:002-165-F11, full insert sequence	NA	coding protein	psRNATarget
XM_015785327.1	ncRNA:24   AGGAUCAUGUUGCUUAGACCUAUA   1   ||=||*|||*|||||||||||||| targets:2249   UCUUAAUACUACGAAUCUGGAUAU   2272 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group phosphoinositide phospholipase C 2 (LOC4337686), mRNA	phosphoinositide phospholipase C 2(LOC4337686)	coding protein	psRNATarget
AK072141.1	ncRNA:24   AGGAUCAUGUUGCUUAGACCUAUA   1   ||=||*|||*|||||||||||||| targets:2816   UCUUAAUACUACGAAUCUGGAUAU   2839 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J013122I07, full insert sequence	NA	coding protein	psRNATarget
AK288602.1	ncRNA:24   AGGAUCAUGUUGCUUAGACCUAUA   1   |=|||*|||||||||||||||*|| targets:779   UUCUAAUACAACGAAUCUGGACAU   802 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090052H23, full insert sequence	NA	coding protein	psRNATarget
AK062145.1	ncRNA:24   AGGAUCAUGUUGCUUAGACCUAUA   1   *=||||||||||||||*||||||* targets:164   AUCUAGUACAACGAAUAUGGAUAG   187 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-045-G09, full insert sequence	NA	coding protein	psRNATarget
XM_015792519.1	ncRNA:24   AGGAUCAUGUUGCUUAGACCUAUA   1   |*=|||*||||||||||||||||* targets:366   UGUUAGCACAACGAAUCUGGAUAG   389 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4343682 (LOC4343682), mRNA	uncharacterized LOC4343682(LOC4343682)	coding protein	psRNATarget
AK101666.1	ncRNA:24   AGGAUCAUGUUGCUUAGACCUAUA   1   ||*|||*|||||||||||*||||| targets:1462   UCGUAGGACAACGAAUCUAGAUAU   1485 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033057N11, full insert sequence	NA	coding protein	psRNATarget
AK064264.1	ncRNA:24   AGGAUCAUGUUGCUUAGACCUAUA   1   |=|-|||||*|||||||||*|||| targets:420   UUC-AGUACUACGAAUCUGAAUAU   442 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-105-D10, full insert sequence	NA	coding protein	psRNATarget
BT131796.1	ncRNA:24   AGGAUCAUGUUGCUUAGACCUAUA   1   |=|-|||||*|||||||||*|||| targets:415   UUC-AGUACUACGAAUCUGAAUAU   437 Target Full Sequence	2.5	Oryza sativa clone RRlibC00475 mRNA sequence	NA	coding protein	psRNATarget
BT130765.1	ncRNA:24   AGGAUCAUGUUGCUUAGACCUAUA   1   |=|-|||||*|||||||||*|||| targets:415   UUC-AGUACUACGAAUCUGAAUAU   437 Target Full Sequence	2.5	Oryza sativa clone RRlibB00543 mRNA sequence	NA	coding protein	psRNATarget
XM_015773806.1	ncRNA:24   AGGAUCAUGUUGCUUAGACCUAUA   1   |=|-|||||*|||||||||*|||| targets:430   UUC-AGUACUACGAAUCUGAAUAU   452 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4334012 (LOC4334012), mRNA	uncharacterized LOC4334012(LOC4334012)	coding protein	psRNATarget