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BaseInfo

ncRNA ID	novel_osa_miR2675
Species	Oryza sativa
Class	miRNA
Genome position	Chr2:23637249-23637357 [+]
Reference genome	IRGSP-1.0
Source	SRR1849784;SRR5351742
Length	23
Mature sequence(if miRNA)	1 - CACGAGACAAAUCUUUUGAGCCU - 23
Stem-loop(if miRNA)	--CA          C                  C        CCUAU   AUGCU     CGAGACAAAU UUUUGAGCCUAAUUAAUC AUAAUUAG     AUG     A     |||||||||| |||||||||||||||||| ||||||||     |||     C     GCUCUGUUUA AAAAUUCGGAUUAAUUAG UAUUAAUC     UAC     A AAAC          A                  A        --UCU   AAAUA
Stem-loop sequence	CACGAGACAAAUCUUUUGAGCCUAAUUAAUCCAUAAUUAGCCUAUAUGAUGCUACAAUAAACAUUCUCUAAUUAUAGAUUAAUUAGGCUUAAAAAAUUUGUCUCGCAAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK121199.1	ncRNA:23   UCCGAGUUUUCUAAACAGAGCAC   1   ||||||||||||||*|||||||| targets:1468   AGGCUCAAAAGAUUCGUCUCGUG   1490 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023087G06, full insert sequence	NA	coding protein	psRNATarget
CT837754.1	ncRNA:23   UCCGAGUUUUCUAAACAGAGCAC   1   |||||||||||||||||||||** targets:1366   AGGCUCAAAAGAUUUGUCUCGCA   1388 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA120A23, full insert sequence	NA	coding protein	psRNATarget
CT833754.1	ncRNA:23   UCCGAGUUUUCUAAACAGAGCAC   1   |||||=||||||||*|||||||| targets:806   AGGCUUAAAAGAUUCGUCUCGUG   828 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI026E11, full insert sequence	NA	coding protein	psRNATarget
AK062636.1	ncRNA:23   UCCGAGUUUUCUAAACAGAGCAC   1   |||||=||||||||*|||||||| targets:804   AGGCUUAAAAGAUUCGUCUCGUG   826 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-105-D02, full insert sequence	NA	coding protein	psRNATarget
XM_015790304.1	ncRNA:23   UCCGAGUUUUCUAAACAGAGCAC   1   |||||=||||||||*|||||||| targets:812   AGGCUUAAAAGAUUCGUCUCGUG   834 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group RING-H2 finger protein ATL45 (LOC4344335), mRNA	RING-H2 finger protein ATL45(LOC4344335)	coding protein	psRNATarget
AK288638.1	ncRNA:23   UCCGAGUUUUCUAAACAGAGCAC   1   |||||=||||*|||||||||||| targets:381   AGGCUUAAAAAAUUUGUCUCGUG   403 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090055N09, full insert sequence	NA	coding protein	psRNATarget
AK120827.1	ncRNA:23   UCCGAGUUUUCUAAACAGAGCAC   1   |||||=||||*|||||||||||| targets:4105   AGGCUUAAAAAAUUUGUCUCGUG   4127 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023019E13, full insert sequence	NA	coding protein	psRNATarget
AK121287.1	ncRNA:23   UCCGAGUUUUCUAAACAGAGCAC   1   |||||=||||*|||||||||||| targets:4543   AGGCUUAAAAAAUUUGUCUCGUG   4565 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023108P15, full insert sequence	NA	coding protein	psRNATarget
LQ236559.1	ncRNA:23   UCCGAGUUUUCUAAACAGAGCAC   1   ||*||=|||||||||||=||||| targets:50   AGACUUAAAAGAUUUGUUUCGUG   72 Target Full Sequence	2.5	Sequence 2554 from Patent EP2985353	NA	coding protein	psRNATarget
HI404429.1	ncRNA:23   UCCGAGUUUUCUAAACAGAGCAC   1   ||*||=|||||||||||=||||| targets:50   AGACUUAAAAGAUUUGUUUCGUG   72 Target Full Sequence	2.5	Sequence 2554 from Patent EP2074227	NA	coding protein	psRNATarget
JB164890.1	ncRNA:23   UCCGAGUUUUCUAAACAGAGCAC   1   ||*||=|||||||||||=||||| targets:50   AGACUUAAAAGAUUUGUUUCGUG   72 Target Full Sequence	2.5	Sequence 2554 from Patent EP2559767	NA	coding protein	psRNATarget
XM_015781196.1	ncRNA:23   UCCGAGUUUUCUAAACAGAGCAC   1   ||*||=|||||||||||||||*| targets:2153   AGACUUAAAAGAUUUGUCUCGCG   2175 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group GATA transcription factor 6 (LOC4336532), mRNA	GATA transcription factor 6(LOC4336532)	coding protein	psRNATarget
AK061474.1	ncRNA:23   UCCGAGUUUUCUAAACAGAGCAC   1   ****||=|||||||||||||||* targets:516   UCCAUCGAAAGAUUUGUCUCGUA   538 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:006-308-F02, full insert sequence	NA	coding protein	psRNATarget
AK058355.1	ncRNA:23   UCCGAGUUUUCUAAACAGAGCAC   1   ****||=|||||||||||||||* targets:594   UCCAUCGAAAGAUUUGUCUCGUA   616 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:001-014-E11, full insert sequence	NA	coding protein	psRNATarget
XM_015769654.1	ncRNA:23   UCCGAGUUUUCUAAACAGAGCAC   1   ****||=|||||||||||||||* targets:3848   UCCAUCGAAAGAUUUGUCUCGUA   3870 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group ABC transporter G family member 31 (LOC4323865), mRNA	ABC transporter G family member 31(LOC4323865)	coding protein	psRNATarget