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BaseInfo

ncRNA ID	novel_osa_miR2670
Species	Oryza sativa
Class	miRNA
Genome position	Chr6:28903633-28903681 [+]
Reference genome	IRGSP-1.0
Source	SRR1849783
Length	23
Mature sequence(if miRNA)	27 - AUGUCCAGAUUCGUAGUACUAGG - 49
Stem-loop(if miRNA)	--               A         UAGUACUACGAAUUU GGCAUGG   ||||||||||||||| ||||||G   AUCAUGAUGCUUAGA CUGUACG GG               C
Stem-loop sequence	UAGUACUACGAAUUUAGGCAUGGGGCAUGUCCAGAUUCGUAGUACUAGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK107672.1	ncRNA:23   GGAUCAUGAUGCUUAGACCUGUA   1   ||||||||||||||||||||||* targets:880   CCUAGUACUACGAAUCUGGACAG   902 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:002-131-H10, full insert sequence	NA	coding protein	psRNATarget
AK288631.1	ncRNA:23   GGAUCAUGAUGCUUAGACCUGUA   1   =|||||||||||||||||||=|| targets:4126   UCUAGUACUACGAAUCUGGAUAU   4148 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090055C12, full insert sequence	NA	coding protein	psRNATarget
XM_015775668.1	ncRNA:23   GGAUCAUGAUGCUUAGACCUGUA   1   |||||||||||||||||||||=* targets:1588   CCUAGUACUACGAAUCUGGACGG   1610 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group RNA pseudouridine synthase 5 (LOC4332490), mRNA	RNA pseudouridine synthase 5(LOC4332490)	coding protein	psRNATarget
AK063369.1	ncRNA:23   GGAUCAUGAUGCUUAGACCUGUA   1   |||||||||||*||||||||||| targets:989   CCUAGUACUACAAAUCUGGACAU   1011 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:001-114-E01, full insert sequence	NA	coding protein	psRNATarget
XM_015794212.1	ncRNA:23   GGAUCAUGAUGCUUAGACCUGUA   1   |||||||||||*||||||||||| targets:1100   CCUAGUACUACAAAUCUGGACAU   1122 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4325579 (LOC4325579), mRNA	uncharacterized LOC4325579(LOC4325579)	coding protein	psRNATarget
XM_015761638.1	ncRNA:23   GGAUCAUGAUGCUUAGACCUGUA   1   |||||||||||||||||*||||| targets:3912   CCUAGUACUACGAAUCUAGACAU   3934 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group putative receptor protein kinase ZmPK1 (LOC107278048), mRNA	putative receptor protein kinase ZmPK1(LOC107278048)	coding protein	psRNATarget
AK241555.1	ncRNA:23   GGAUCAUGAUGCUUAGACCUGUA   1   ==||||||||||||||||||||* targets:157   UUUAGUACUACGAAUCUGGACAG   179 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J065178B07, full insert sequence	NA	coding protein	psRNATarget
CT829763.1	ncRNA:23   GGAUCAUGAUGCUUAGACCUGUA   1   =|||*|||||||||||||||||| targets:976   UCUAAUACUACGAAUCUGGACAU   998 Target Full Sequence	1.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA105M10, full insert sequence	NA	coding protein	psRNATarget
CT830398.1	ncRNA:23   GGAUCAUGAUGCUUAGACCUGUA   1   ==|||||=||||||||||||=|| targets:358   UUUAGUAUUACGAAUCUGGAUAU   380 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA041E02, full insert sequence	NA	coding protein	psRNATarget
AK288866.1	ncRNA:23   GGAUCAUGAUGCUUAGACCUGUA   1   |=|||||*||||||||||||||| targets:1903   CUUAGUAGUACGAAUCUGGACAU   1925 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090078B06, full insert sequence	NA	coding protein	psRNATarget
HI404552.1	ncRNA:23   GGAUCAUGAUGCUUAGACCUGUA   1   |||||||||||*||||||||||* targets:47   CCUAGUACUACAAAUCUGGACAG   69 Target Full Sequence	2.5	Sequence 2677 from Patent EP2074227	NA	coding protein	psRNATarget
JB165013.1	ncRNA:23   GGAUCAUGAUGCUUAGACCUGUA   1   |||||||||||*||||||||||* targets:47   CCUAGUACUACAAAUCUGGACAG   69 Target Full Sequence	2.5	Sequence 2677 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236682.1	ncRNA:23   GGAUCAUGAUGCUUAGACCUGUA   1   |||||||||||*||||||||||* targets:47   CCUAGUACUACAAAUCUGGACAG   69 Target Full Sequence	2.5	Sequence 2677 from Patent EP2985353	NA	coding protein	psRNATarget
JB164009.1	ncRNA:23   GGAUCAUGAUGCUUAGACCUGUA   1   ||||*|||||||||||||||||* targets:154   CCUAAUACUACGAAUCUGGACAG   176 Target Full Sequence	2.0	Sequence 1673 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235678.1	ncRNA:23   GGAUCAUGAUGCUUAGACCUGUA   1   ||||*|||||||||||||||||* targets:154   CCUAAUACUACGAAUCUGGACAG   176 Target Full Sequence	2.0	Sequence 1673 from Patent EP2985353	NA	coding protein	psRNATarget
HI403548.1	ncRNA:23   GGAUCAUGAUGCUUAGACCUGUA   1   ||||*|||||||||||||||||* targets:154   CCUAAUACUACGAAUCUGGACAG   176 Target Full Sequence	2.0	Sequence 1673 from Patent EP2074227	NA	coding protein	psRNATarget
AK111992.1	ncRNA:23   GGAUCAUGAUGCUUAGACCUGUA   1   ||||||||*|||||||||||||* targets:707   CCUAGUACAACGAAUCUGGACAG   729 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:001-033-B02, full insert sequence	NA	coding protein	psRNATarget
AK288418.1	ncRNA:23   GGAUCAUGAUGCUUAGACCUGUA   1   ||||*|||||||||||||||||* targets:889   CCUAAUACUACGAAUCUGGACAG   911 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090031L18, full insert sequence	NA	coding protein	psRNATarget
XM_015789120.1	ncRNA:23   GGAUCAUGAUGCUUAGACCUGUA   1   ||||||||*|||||||||||||* targets:1268   CCUAGUACAACGAAUCUGGACAG   1290 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group mitochondrial ubiquitin ligase activator of NFKB 1 (LOC4344112), transcript variant X2, mRNA	mitochondrial ubiquitin ligase activator of NFKB 1(LOC4344112)	coding protein	psRNATarget
XM_015789119.1	ncRNA:23   GGAUCAUGAUGCUUAGACCUGUA   1   ||||||||*|||||||||||||* targets:1363   CCUAGUACAACGAAUCUGGACAG   1385 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group mitochondrial ubiquitin ligase activator of NFKB 1 (LOC4344112), transcript variant X1, mRNA	mitochondrial ubiquitin ligase activator of NFKB 1(LOC4344112)	coding protein	psRNATarget
AK102332.1	ncRNA:23   GGAUCAUGAUGCUUAGACCUGUA   1   ||||||||*|||||||||||||* targets:1767   CCUAGUACAACGAAUCUGGACAG   1789 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J033090N02, full insert sequence	NA	coding protein	psRNATarget
AK064924.1	ncRNA:23   GGAUCAUGAUGCUUAGACCUGUA   1   |=||*|||||||||||||||=|| targets:2017   CUUAAUACUACGAAUCUGGAUAU   2039 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013000N15, full insert sequence	NA	coding protein	psRNATarget
AK119748.1	ncRNA:23   GGAUCAUGAUGCUUAGACCUGUA   1   |=||*|||||||||||||||=|| targets:2194   CUUAAUACUACGAAUCUGGAUAU   2216 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-165-F11, full insert sequence	NA	coding protein	psRNATarget
XM_015785327.1	ncRNA:23   GGAUCAUGAUGCUUAGACCUGUA   1   |=||*|||||||||||||||=|| targets:2250   CUUAAUACUACGAAUCUGGAUAU   2272 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group phosphoinositide phospholipase C 2 (LOC4337686), mRNA	phosphoinositide phospholipase C 2(LOC4337686)	coding protein	psRNATarget
AK072141.1	ncRNA:23   GGAUCAUGAUGCUUAGACCUGUA   1   |=||*|||||||||||||||=|| targets:2817   CUUAAUACUACGAAUCUGGAUAU   2839 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013122I07, full insert sequence	NA	coding protein	psRNATarget
HI403832.1	ncRNA:23   GGAUCAUGAUGCUUAGACCUGUA   1   =||||||||||||||||||*||* targets:12   UCUAGUACUACGAAUCUGGUCAG   34 Target Full Sequence	2.5	Sequence 1957 from Patent EP2074227	NA	coding protein	psRNATarget
JB164293.1	ncRNA:23   GGAUCAUGAUGCUUAGACCUGUA   1   =||||||||||||||||||*||* targets:12   UCUAGUACUACGAAUCUGGUCAG   34 Target Full Sequence	2.5	Sequence 1957 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235962.1	ncRNA:23   GGAUCAUGAUGCUUAGACCUGUA   1   =||||||||||||||||||*||* targets:12   UCUAGUACUACGAAUCUGGUCAG   34 Target Full Sequence	2.5	Sequence 1957 from Patent EP2985353	NA	coding protein	psRNATarget
AK067512.1	ncRNA:23   GGAUCAUGAUGCUUAGACCUGUA   1   =*|||||||==|||||||||||| targets:3622   UAUAGUACUGUGAAUCUGGACAU   3644 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013109G08, full insert sequence	NA	coding protein	psRNATarget
XM_015778607.1	ncRNA:23   GGAUCAUGAUGCUUAGACCUGUA   1   =|||||||*|||||||||||||* targets:1063   UCUAGUACAACGAAUCUGGACAG   1085 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group anthocyanidin reductase (LOC4337098), mRNA	anthocyanidin reductase(LOC4337098)	coding protein	psRNATarget
LQ236221.1	ncRNA:23   GGAUCAUGAUGCUUAGACCUGUA   1   =*|||||||||||||=||||||* targets:22   UAUAGUACUACGAAUUUGGACAG   44 Target Full Sequence	2.5	Sequence 2216 from Patent EP2985353	NA	coding protein	psRNATarget
HI404091.1	ncRNA:23   GGAUCAUGAUGCUUAGACCUGUA   1   =*|||||||||||||=||||||* targets:22   UAUAGUACUACGAAUUUGGACAG   44 Target Full Sequence	2.5	Sequence 2216 from Patent EP2074227	NA	coding protein	psRNATarget
JB164552.1	ncRNA:23   GGAUCAUGAUGCUUAGACCUGUA   1   =*|||||||||||||=||||||* targets:22   UAUAGUACUACGAAUUUGGACAG   44 Target Full Sequence	2.5	Sequence 2216 from Patent EP2559767	NA	coding protein	psRNATarget
XM_015759388.1	ncRNA:23   GGAUCAUGAUGCUUAGACCUGUA   1   |||=||||||||||||||*|||* targets:420   CCUGGUACUACGAAUCUGAACAA   442 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group ent-cassadiene C2-hydroxylase-like (LOC4348721), transcript variant X2, mRNA	ent-cassadiene C2-hydroxylase-like(LOC4348721)	coding protein	psRNATarget
AK288796.1	ncRNA:23   GGAUCAUGAUGCUUAGACCUGUA   1   *=|||||||||||||||*||||| targets:563   GUUAGUACUACGAAUCUAGACAU   585 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090070F05, full insert sequence	NA	coding protein	psRNATarget
AK110747.1	ncRNA:23   GGAUCAUGAUGCUUAGACCUGUA   1   |*|||||=|||||||||*||||| targets:493   CAUAGUAUUACGAAUCUAGACAU   515 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-170-G02, full insert sequence	NA	coding protein	psRNATarget
XM_015770952.1	ncRNA:23   GGAUCAUGAUGCUUAGACCUGUA   1   |=|||*|||||||||||*||||| targets:1339   CUUAGAACUACGAAUCUAGACAU   1361 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group putative phosphatidylinositol N-acetylglucosaminyltransferase subunit C (LOC4330019), mRNA	putative phosphatidylinositol N-acetylglucosaminyltransferase subunit C(LOC4330019)	coding protein	psRNATarget
XM_015782022.1	ncRNA:23   GGAUCAUGAUGCUUAGACCUGUA   1   ||*|||||*|=|||||||||||| targets:1318   CCAAGUACAAUGAAUCUGGACAU   1340 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group zinc transporter 9 (LOC4339080), transcript variant X1, mRNA	zinc transporter 9(LOC4339080)	coding protein	psRNATarget
XM_015782023.1	ncRNA:23   GGAUCAUGAUGCUUAGACCUGUA   1   ||*|||||*|=|||||||||||| targets:2360   CCAAGUACAAUGAAUCUGGACAU   2382 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group zinc transporter 9 (LOC4339080), transcript variant X2, mRNA	zinc transporter 9(LOC4339080)	coding protein	psRNATarget
XM_015763640.1	ncRNA:23   GGAUCAUGAUGCUUAGACCUGUA   1   |*|||||=|||||||||*||||| targets:3180   CAUAGUAUUACGAAUCUAGACAU   3202 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At1g52620 (LOC9268419), mRNA	pentatricopeptide repeat-containing protein At1g52620(LOC9268419)	coding protein	psRNATarget
AK288602.1	ncRNA:23   GGAUCAUGAUGCUUAGACCUGUA   1   =|||*|||*|||||||||||||| targets:780   UCUAAUACAACGAAUCUGGACAU   802 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090052H23, full insert sequence	NA	coding protein	psRNATarget
HI403857.1	ncRNA:23   GGAUCAUGAUGCUUAGACCUGUA   1   |*|||||*||||||||||||||* targets:61   CAUAGUAAUACGAAUCUGGACAG   83 Target Full Sequence	2.0	Sequence 1982 from Patent EP2074227	NA	coding protein	psRNATarget
JB164318.1	ncRNA:23   GGAUCAUGAUGCUUAGACCUGUA   1   |*|||||*||||||||||||||* targets:61   CAUAGUAAUACGAAUCUGGACAG   83 Target Full Sequence	2.0	Sequence 1982 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235987.1	ncRNA:23   GGAUCAUGAUGCUUAGACCUGUA   1   |*|||||*||||||||||||||* targets:61   CAUAGUAAUACGAAUCUGGACAG   83 Target Full Sequence	2.0	Sequence 1982 from Patent EP2985353	NA	coding protein	psRNATarget
AK288362.1	ncRNA:23   GGAUCAUGAUGCUUAGACCUGUA   1   ||*||||||||||||||*||||* targets:2674   CCCAGUACUACGAAUCUAGACAG   2696 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090025C16, full insert sequence	NA	coding protein	psRNATarget
LQ236232.1	ncRNA:23   GGAUCAUGAUGCUUAGACCUGUA   1   |*|||||=*=||||||||||||| targets:50   CAUAGUAUAGCGAAUCUGGACAU   72 Target Full Sequence	3.0	Sequence 2227 from Patent EP2985353	NA	coding protein	psRNATarget
HI404102.1	ncRNA:23   GGAUCAUGAUGCUUAGACCUGUA   1   |*|||||=*=||||||||||||| targets:50   CAUAGUAUAGCGAAUCUGGACAU   72 Target Full Sequence	3.0	Sequence 2227 from Patent EP2074227	NA	coding protein	psRNATarget
JB164563.1	ncRNA:23   GGAUCAUGAUGCUUAGACCUGUA   1   |*|||||=*=||||||||||||| targets:50   CAUAGUAUAGCGAAUCUGGACAU   72 Target Full Sequence	3.0	Sequence 2227 from Patent EP2559767	NA	coding protein	psRNATarget