Search result

BaseInfo

ncRNA ID novel_osa_miR2668
Species Oryza sativa
Class miRNA
Genome position Chr5:26331971-26332084 [-]
Reference genome IRGSP-1.0
Source SRR1849783;SRR3123646;SRR1738228
Length 25
Mature sequence(if miRNA) 90 - AUCGCGAGACGAAUCUUUUGAGACU - 114
Stem-loop(if miRNA) --                      A        U    A      -   ---AAG   U
  AUCGCGAGACGAAUCUUUUGAG CUAAUUAG CCAU AUUAGC CAU      UGC A
  |||||||||||||||||||||| |||||||| |||| |||||| |||      |||
  UGGCGCUCUGUUUAGAAAAUUC GAUUAAUU GGUA UAAUCG GUA      AUG C
UU                      G        U    G      U   CACCCA   A
Stem-loop sequence AUCGCGAGACGAAUCUUUUGAGACUAAUUAGUCCAUAAUUAGCCAUAAGUGCUACAGUAACCCACAUGUGCUAAUGAUGGUUUAAUUAGGCUUAAAAGAUUUGUCUCGCGGUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
CT831461.1
ncRNA:25   UCAGAGUUUUCUAAGCAGAGCGCUA   1
  |||||=|||||||||||||||||=|
targets:436   AGUCUUAAAAGAUUCGUCUCGCGGU   460

1.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA110A21, full insert sequence NA coding protein psRNATarget
AK103318.1
ncRNA:25   UCAGAGUUUUCUAAGCAGAGCGCUA   1
  ||*||||||||||||||||||||||
targets:1155   AGGCUCAAAAGAUUCGUCUCGCGAU   1179

0.0 Oryza sativa Japonica Group cDNA clone:J033125I08, full insert sequence NA coding protein psRNATarget
XM_015761412.1
ncRNA:25   UCAGAGUUUUCUAAGCAGAGCGCUA   1
  ||*||||||||||||||||||||||
targets:633   AGGCUCAAAAGAUUCGUCUCGCGAU   657

0.0 PREDICTED: Oryza sativa Japonica Group nucleobase-ascorbate transporter 2 (LOC4325616), mRNA nucleobase-ascorbate transporter 2(LOC4325616) coding protein psRNATarget
AK067512.1
ncRNA:25   UCAGAGUUUUCUAAGCAGAGCGCUA   1
  ||*||||||||||||||||||||||
targets:1189   AGGCUCAAAAGAUUCGUCUCGCGAU   1213

0.0 Oryza sativa Japonica Group cDNA clone:J013109G08, full insert sequence NA coding protein psRNATarget
AK103177.1
ncRNA:25   UCAGAGUUUUCUAAGCAGAGCGCUA   1
  ||*|||||||||||||||||||||*
targets:1319   AGACUCAAAAGAUUCGUCUCGCGAA   1343

1.0 Oryza sativa Japonica Group cDNA clone:J033121H17, full insert sequence NA coding protein psRNATarget
XM_015788312.1
ncRNA:25   UCAGAGUUUUCUAAGCAGAGCGCUA   1
  ||*|||||||||||||||||||||*
targets:1675   AGACUCAAAAGAUUCGUCUCGCGAA   1699

1.0 PREDICTED: Oryza sativa Japonica Group serine/arginine-rich splicing factor SR45a (LOC4342102), transcript variant X1, mRNA serine/arginine-rich splicing factor SR45a(LOC4342102) coding protein psRNATarget
AK287827.1
ncRNA:25   UCAGAGUUUUCUAAGCAGAGCGCUA   1
  ||*|||||||||||||||||||||*
targets:2076   AGACUCAAAAGAUUCGUCUCGCGAA   2100

1.0 Oryza sativa Japonica Group cDNA, clone: J065185G19, full insert sequence NA coding protein psRNATarget
AK073850.1
ncRNA:25   UCAGAGUUUUCUAAGCAGAGCGCUA   1
  ||*|||||||||||||||||||||*
targets:1658   AGACUCAAAAGAUUCGUCUCGCGAA   1682

1.0 Oryza sativa Japonica Group cDNA clone:J033073F11, full insert sequence NA coding protein psRNATarget
AK101179.1
ncRNA:25   UCAGAGUUUUCUAAGCAGAGCGCUA   1
  ||-||=|||||||||||||||||||
targets:2727   AG-CUUAAAAGAUUCGUCUCGCGAU   2750

0.0 Oryza sativa Japonica Group cDNA clone:J033029D23, full insert sequence NA coding protein psRNATarget
HI404503.1
ncRNA:25   UCAGAGUUUUCUAAGCAGAGCGCUA   1
  ||*|||||||||||||||||||*||
targets:91   AGCCUCAAAAGAUUCGUCUCGCAAU   115

1.5 Sequence 2628 from Patent EP2074227 NA coding protein psRNATarget
LQ236633.1
ncRNA:25   UCAGAGUUUUCUAAGCAGAGCGCUA   1
  ||*|||||||||||||||||||*||
targets:91   AGCCUCAAAAGAUUCGUCUCGCAAU   115

1.5 Sequence 2628 from Patent EP2985353 NA coding protein psRNATarget
JB164964.1
ncRNA:25   UCAGAGUUUUCUAAGCAGAGCGCUA   1
  ||*|||||||||||||||||||*||
targets:91   AGCCUCAAAAGAUUCGUCUCGCAAU   115

1.5 Sequence 2628 from Patent EP2559767 NA coding protein psRNATarget
AK101996.1
ncRNA:25   UCAGAGUUUUCUAAGCAGAGCGCUA   1
  ||*|||||||||||||||||||*||
targets:1699   AGGCUCAAAAGAUUCGUCUCGCAAU   1723

1.5 Oryza sativa Japonica Group cDNA clone:J033079J12, full insert sequence NA coding protein psRNATarget
XM_015772097.1
ncRNA:25   UCAGAGUUUUCUAAGCAGAGCGCUA   1
  ||*|||||||||||||||||||*||
targets:1917   AGGCUCAAAAGAUUCGUCUCGCAAU   1941

1.5 PREDICTED: Oryza sativa Japonica Group cinnamate beta-D-glucosyltransferase (LOC4328553), mRNA cinnamate beta-D-glucosyltransferase(LOC4328553) coding protein psRNATarget
AK102878.1
ncRNA:25   UCAGAGUUUUCUAAGCAGAGCGCUA   1
  ||*|||||||||||||||||||*||
targets:2132   AGACUCAAAAGAUUCGUCUCGCAAU   2156

1.5 Oryza sativa Japonica Group cDNA clone:J033112G02, full insert sequence NA coding protein psRNATarget
AK070572.1
ncRNA:25   UCAGAGUUUUCUAAGCAGAGCGCUA   1
  ||*|||||||||||||||||||*||
targets:2215   AGGCUCAAAAGAUUCGUCUCGCAAU   2239

1.5 Oryza sativa Japonica Group cDNA clone:J023055P17, full insert sequence NA coding protein psRNATarget
XM_015785585.1
ncRNA:25   UCAGAGUUUUCUAAGCAGAGCGCUA   1
  ||*|||||||||||||||||||*||
targets:2203   AGACUCAAAAGAUUCGUCUCGCAAU   2227

1.5 PREDICTED: Oryza sativa Japonica Group external alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial (LOC4341876), transcript variant X2, mRNA external alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial(LOC4341876) coding protein psRNATarget
XM_015785584.1
ncRNA:25   UCAGAGUUUUCUAAGCAGAGCGCUA   1
  ||*|||||||||||||||||||*||
targets:2336   AGACUCAAAAGAUUCGUCUCGCAAU   2360

1.5 PREDICTED: Oryza sativa Japonica Group external alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial (LOC4341876), transcript variant X1, mRNA external alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial(LOC4341876) coding protein psRNATarget
AK120219.1
ncRNA:25   UCAGAGUUUUCUAAGCAGAGCGCUA   1
  ||*||||||||||||*|||||||||
targets:612   AGGCUCAAAAGAUUCAUCUCGCGAU   636

1.5 Oryza sativa Japonica Group cDNA clone:J013041B17, full insert sequence NA coding protein psRNATarget
AK288948.1
ncRNA:25   UCAGAGUUUUCUAAGCAGAGCGCUA   1
  ||*|||||||||||||||||||*||
targets:529   AGGCUCAAAAGAUUCGUCUCGCAAU   553

1.5 Oryza sativa Japonica Group cDNA, clone: J090083I09, full insert sequence NA coding protein psRNATarget
AK288820.1
ncRNA:25   UCAGAGUUUUCUAAGCAGAGCGCUA   1
  ||*|*||||||||||||||||||||
targets:3104   AGACACAAAAGAUUCGUCUCGCGAU   3128

0.0 Oryza sativa Japonica Group cDNA, clone: J090073D04, full insert sequence NA coding protein psRNATarget
AK120234.1
ncRNA:25   UCAGAGUUUUCUAAGCAGAGCGCUA   1
  ||*|||||||||||||||||||*||
targets:2507   AGGCUCAAAAGAUUCGUCUCGCAAU   2531

1.5 Oryza sativa Japonica Group cDNA clone:J013043L17, full insert sequence NA coding protein psRNATarget
AK287930.1
ncRNA:25   UCAGAGUUUUCUAAGCAGAGCGCUA   1
  ||*|||||||||||||||||||*||
targets:2458   AGGCUCAAAAGAUUCGUCUCGCAAU   2482

1.5 Oryza sativa Japonica Group cDNA, clone: J065218P20, full insert sequence NA coding protein psRNATarget
XM_015769710.1
ncRNA:25   UCAGAGUUUUCUAAGCAGAGCGCUA   1
  ||*|||||||||||||||||||*||
targets:2938   AGGCUCAAAAGAUUCGUCUCGCAAU   2962

1.5 PREDICTED: Oryza sativa Japonica Group disease resistance protein RPP13 (LOC4328990), transcript variant X2, mRNA disease resistance protein RPP13(LOC4328990) coding protein psRNATarget
XM_015769709.1
ncRNA:25   UCAGAGUUUUCUAAGCAGAGCGCUA   1
  ||*|||||||||||||||||||*||
targets:3072   AGGCUCAAAAGAUUCGUCUCGCAAU   3096

1.5 PREDICTED: Oryza sativa Japonica Group disease resistance protein RPP13 (LOC4328990), transcript variant X1, mRNA disease resistance protein RPP13(LOC4328990) coding protein psRNATarget
XM_015781196.1
ncRNA:25   UCAGAGUUUUCUAAGCAGAGCGCUA   1
  ||*||=||||||||=|||||||||*
targets:2153   AGACUUAAAAGAUUUGUCUCGCGAA   2177

2.5 PREDICTED: Oryza sativa Japonica Group GATA transcription factor 6 (LOC4336532), mRNA GATA transcription factor 6(LOC4336532) coding protein psRNATarget
XM_015778499.1
ncRNA:25   UCAGAGUUUUCUAAGCAGAGCGCUA   1
  ||*||=|||||||||*|||||||||
targets:24   AGACUUAAAAGAUUCAUCUCGCGAU   48

1.5 PREDICTED: Oryza sativa Japonica Group LRR receptor-like serine/threonine-protein kinase ERECTA (LOC4334979), transcript variant X3, mRNA LRR receptor-like serine/threonine-protein kinase ERECTA(LOC4334979) coding protein psRNATarget
XM_015776798.1
ncRNA:25   UCAGAGUUUUCUAAGCAGAGCGCUA   1
  ||*||=||||||||||||||||*||
targets:1990   AGGCUUAAAAGAUUCGUCUCGCUAU   2014

1.5 PREDICTED: Oryza sativa Japonica Group U11/U12 small nuclear ribonucleoprotein 65 kDa protein (LOC4332713), transcript variant X1, mRNA U11/U12 small nuclear ribonucleoprotein 65 kDa protein(LOC4332713) coding protein psRNATarget
AK099773.1
ncRNA:25   UCAGAGUUUUCUAAGCAGAGCGCUA   1
  ||*||=|||||||||*|||||||||
targets:721   AGACUUAAAAGAUUCAUCUCGCGAU   745

1.5 Oryza sativa Japonica Group cDNA clone:J013095E04, full insert sequence NA coding protein psRNATarget
AK065510.1
ncRNA:25   UCAGAGUUUUCUAAGCAGAGCGCUA   1
  ||*||=|||||||||*|||||||||
targets:791   AGACUUAAAAGAUUCAUCUCGCGAU   815

1.5 Oryza sativa Japonica Group cDNA clone:J013030L03, full insert sequence NA coding protein psRNATarget
CT833304.1
ncRNA:25   UCAGAGUUUUCUAAGCAGAGCGCUA   1
  ||*|||||*|||||||||||||||*
targets:1324   AGGCUCAAUAGAUUCGUCUCGCGAA   1348

2.0 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN010D02, full insert sequence NA coding protein psRNATarget
AK101033.1
ncRNA:25   UCAGAGUUUUCUAAGCAGAGCGCUA   1
  ||*|||||*|||||||||||||||*
targets:1925   AGACUCAAUAGAUUCGUCUCGCGAA   1949

2.0 Oryza sativa Japonica Group cDNA clone:J023150N19, full insert sequence NA coding protein psRNATarget
XM_015767222.1
ncRNA:25   UCAGAGUUUUCUAAGCAGAGCGCUA   1
  ||*|||||*|||||||||||||||*
targets:1924   AGACUCAAUAGAUUCGUCUCGCGAA   1948

2.0 PREDICTED: Oryza sativa Japonica Group beclin-1-like protein (LOC4324394), transcript variant X2, mRNA beclin-1-like protein(LOC4324394) coding protein psRNATarget
XM_015767213.1
ncRNA:25   UCAGAGUUUUCUAAGCAGAGCGCUA   1
  ||*|||||*|||||||||||||||*
targets:1942   AGACUCAAUAGAUUCGUCUCGCGAA   1966

2.0 PREDICTED: Oryza sativa Japonica Group beclin-1-like protein (LOC4324394), transcript variant X1, mRNA beclin-1-like protein(LOC4324394) coding protein psRNATarget
AK120728.1
ncRNA:25   UCAGAGUUUUCUAAGCAGAGCGCUA   1
  ||*|||||*|||||||||||||||*
targets:1491   AGGCUCAAUAGAUUCGUCUCGCGAA   1515

2.0 Oryza sativa Japonica Group cDNA clone:J023003A06, full insert sequence NA coding protein psRNATarget
AK100421.1
ncRNA:25   UCAGAGUUUUCUAAGCAGAGCGCUA   1
  ||*|||||*|||||||||||||||*
targets:1519   AGGCUCAAUAGAUUCGUCUCGCGAA   1543

2.0 Oryza sativa Japonica Group cDNA clone:J023088B04, full insert sequence NA coding protein psRNATarget
AK288305.1
ncRNA:25   UCAGAGUUUUCUAAGCAGAGCGCUA   1
  ||*|||||||||||||||||||*|*
targets:549   AGGCUCAAAAGAUUCGUCUCGCAAA   573

2.5 Oryza sativa Japonica Group cDNA, clone: J090020F20, full insert sequence NA coding protein psRNATarget
AK288305.1
ncRNA:25   UCAGAGUUUUCUAAGCAGAGCGCUA   1
  ||*||=||*|*||||||||||||||
targets:2453   AGGCUUAAUAAAUUCGUCUCGCGAU   2477

2.0 Oryza sativa Japonica Group cDNA, clone: J090020F20, full insert sequence NA coding protein psRNATarget
AK288873.1
ncRNA:25   UCAGAGUUUUCUAAGCAGAGCGCUA   1
  ||*|||||*|||||||||||||||*
targets:5618   AGGCUCAAUAGAUUCGUCUCGCGAA   5642

2.0 Oryza sativa Japonica Group cDNA, clone: J090078I24, full insert sequence NA coding protein psRNATarget
AK288942.1
ncRNA:25   UCAGAGUUUUCUAAGCAGAGCGCUA   1
  ||*||==|||||||||||||||*||
targets:3371   AGGCUUGAAAGAUUCGUCUCGCAAU   3395

2.5 Oryza sativa Japonica Group cDNA, clone: J090083D07, full insert sequence NA coding protein psRNATarget
XM_015794883.1
ncRNA:25   UCAGAGUUUUCUAAGCAGAGCGCUA   1
  ||*||=||*|||||||||||||||*
targets:92   AGGCUUAAUAGAUUCGUCUCGCGAA   116

2.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107282066 (LOC107282066), mRNA uncharacterized LOC107282066(LOC107282066) coding protein psRNATarget
AK072161.1
ncRNA:25   UCAGAGUUUUCUAAGCAGAGCGCUA   1
  ||*||=||||||||||||||||*|*
targets:1116   AGACUUAAAAGAUUCGUCUCGCAAA   1140

2.5 Oryza sativa Japonica Group cDNA clone:J013132P06, full insert sequence NA coding protein psRNATarget
AK289029.1
ncRNA:25   UCAGAGUUUUCUAAGCAGAGCGCUA   1
  ||*||=||||||||||||||||*|*
targets:2219   AGGCUUAAAAGAUUCGUCUCGCAAA   2243

2.5 Oryza sativa Japonica Group cDNA, clone: J090090O22, full insert sequence NA coding protein psRNATarget
AK064127.1
ncRNA:25   UCAGAGUUUUCUAAGCAGAGCGCUA   1
  ||*||||||||*|||*|||||||||
targets:123   AGGCUCAAAAGUUUCAUCUCGCGAU   147

2.5 Oryza sativa Japonica Group cDNA clone:002-102-E01, full insert sequence NA coding protein psRNATarget
AK288279.1
ncRNA:25   UCAGAGUUUUCUAAGCAGAGCGCUA   1
  *****||||||||||||||=|||||
targets:5696   UUAGGCAAAAGAUUCGUCUUGCGAU   5720

1.5 Oryza sativa Japonica Group cDNA, clone: J090017N13, full insert sequence NA coding protein psRNATarget
AK288241.1
ncRNA:25   UCAGAGUUUUCUAAGCAGAGCGCUA   1
  ||*||-||||*|||||||||||||*
targets:673   AGACU-AAAAAAUUCGUCUCGCGAA   696

2.0 Oryza sativa Japonica Group cDNA, clone: J090013L13, full insert sequence NA coding protein psRNATarget
AK288230.1
ncRNA:25   UCAGAGUUUUCUAAGCAGAGCGCUA   1
  =|*||*||||||||||||||||*|*
targets:5927   GGGCUGAAAAGAUUCGUCUCGCAAA   5951

2.5 Oryza sativa Japonica Group cDNA, clone: J090012M14, full insert sequence NA coding protein psRNATarget
© 2017 OPP-ncRBASE. All rights reserved.