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BaseInfo

ncRNA ID	novel_osa_miR2667
Species	Oryza sativa
Class	miRNA
Genome position	Chr3:1453459-1453564 [+]
Reference genome	IRGSP-1.0
Source	SRR1849783
Length	24
Mature sequence(if miRNA)	1 - CAAACGUUGAACACGGAAACCAGG - 24
Stem-loop(if miRNA)	--    C    AA A      -   G    UUU   U              UAG   CAAA GUUG  C CGGAAA CCA GGUU   CUU UUUUGGGACGGAGG   U   |||| ||||  | |||||| ||| ||||   ||| ||||||||||||||   GUUU CAAC  G GCCUUU GGU CCGA   GAA AAAACCCUGCCUCC   A CA    -    CC C      U   A    CAU   U              UUC
Stem-loop sequence	CAAACGUUGAACACGGAAACCAGGGUUUUUCUUUUUUUGGGACGGAGGUAGUACUUCCUCCGUCCCAAAAUAAGUACAGCCAUGGUUUUCCGCGCCCAACUUUGAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ236018.1	ncRNA:24   GGA-CCAAAGGCACAAGUUGCAAAC   1   |||-|||||=||||||=|||||||| targets:5   CCUAGGUUUUCGUGUUUAACGUUUG   29 Target Full Sequence	2.5	Sequence 2013 from Patent EP2985353	NA	coding protein	psRNATarget
HI403888.1	ncRNA:24   GGA-CCAAAGGCACAAGUUGCAAAC   1   |||-|||||=||||||=|||||||| targets:5   CCUAGGUUUUCGUGUUUAACGUUUG   29 Target Full Sequence	2.5	Sequence 2013 from Patent EP2074227	NA	coding protein	psRNATarget
JB164349.1	ncRNA:24   GGA-CCAAAGGCACAAGUUGCAAAC   1   |||-|||||=||||||=|||||||| targets:5   CCUAGGUUUUCGUGUUUAACGUUUG   29 Target Full Sequence	2.5	Sequence 2013 from Patent EP2559767	NA	coding protein	psRNATarget
AK288529.1	ncRNA:24   GGACCAAAGGCACAAGUUGCAAAC   1   |||||*||||||||*||||||||| targets:65   CCUGGCUUCCGUGUCCAACGUUUG   88 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090044M17, full insert sequence	NA	coding protein	psRNATarget
XM_015760576.1	ncRNA:24   GGA-CCAAAGGCACAAGUUGCAAAC   1   |||-||||||=||||*||||||||| targets:1943   CCUAGGUUUCUGUGUCCAACGUUUG   1967 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9272430 (LOC9272430), transcript variant X1, mRNA	uncharacterized LOC9272430(LOC9272430)	coding protein	psRNATarget
XM_015760578.1	ncRNA:24   GGA-CCAAAGGCACAAGUUGCAAAC   1   |||-||||||=||||*||||||||| targets:1859   CCUAGGUUUCUGUGUCCAACGUUUG   1883 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9272430 (LOC9272430), transcript variant X3, mRNA	uncharacterized LOC9272430(LOC9272430)	coding protein	psRNATarget
XM_015792475.1	ncRNA:24   GG-AC-CAAAGGCACAAGUUGCAAAC   1   ||-||-||||||||||*||||||||| targets:2597   CCAUGAGUUUCCGUGUCCAACGUUUG   2622 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group hydrophobic protein LTI6A (LOC4344028), transcript variant X4, mRNA	hydrophobic protein LTI6A(LOC4344028)	coding protein	psRNATarget
XM_015792473.1	ncRNA:24   GG-AC-CAAAGGCACAAGUUGCAAAC   1   ||-||-||||||||||*||||||||| targets:2583   CCAUGAGUUUCCGUGUCCAACGUUUG   2608 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group hydrophobic protein LTI6A (LOC4344028), transcript variant X2, mRNA	hydrophobic protein LTI6A(LOC4344028)	coding protein	psRNATarget
XM_015771325.1	ncRNA:24   GGACCAAAGGCACAAGUUGCAAAC   1   *|||||*|||||||*||||||||| targets:1206   ACUGGUCUCCGUGUCCAACGUUUG   1229 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group protein synthesis inhibitor I (LOC4324068), mRNA	protein synthesis inhibitor I(LOC4324068)	coding protein	psRNATarget
AK287584.1	ncRNA:24   GGACCAAAGGCACAAGUUGCAAAC   1   *|||||*|||||||*||||||||| targets:1183   ACUGGUCUCCGUGUCCAACGUUUG   1206 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065044J10, full insert sequence	NA	coding protein	psRNATarget
AB051108.1	ncRNA:24   GGACCAAAGGCACAAGUUGCAAAC   1   *|||||*|||||||*||||||||| targets:1178   ACUGGUCUCCGUGUCCAACGUUUG   1201 Target Full Sequence	2.5	Oryza sativa RIP2 mRNA for ribosome inactivating protein 2, complete cds	NA	coding protein	psRNATarget
AK103707.1	ncRNA:24   GGACCAAAGGCACAAGUUGCAAAC   1   *|||||*|||||||*||||||||| targets:1188   ACUGGUCUCCGUGUCCAACGUUUG   1211 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033136O07, full insert sequence	NA	coding protein	psRNATarget
XM_015781687.1	ncRNA:24   GGACCAAAGGCACAAGUUGCAAAC   1   |||**|||=|||||||||=||||| targets:2413   CCUAAUUUUCGUGUUCAAUGUUUG   2436 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group UDP-glycosyltransferase 92A1 (LOC4335348), transcript variant X1, mRNA	UDP-glycosyltransferase 92A1(LOC4335348)	coding protein	psRNATarget
AK068604.1	ncRNA:24   GGACCAAAGGCACAAGUUGCAAAC   1   |||**|||=|||||||||=||||| targets:2392   CCUAAUUUUCGUGUUCAAUGUUUG   2415 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013157G05, full insert sequence	NA	coding protein	psRNATarget
CT832631.1	ncRNA:24   GGACCAAAGGCACAAGUUGCAAAC   1   *=*|||||||||||*||||||||| targets:333   GUGGGUUUCCGUGUCCAACGUUUG   356 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA021A12, full insert sequence	NA	coding protein	psRNATarget
CT832630.1	ncRNA:24   GGACCAAAGGCACAAGUUGCAAAC   1   *=*|||||||||||*||||||||| targets:333   GUGGGUUUCCGUGUCCAACGUUUG   356 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA020B12, full insert sequence	NA	coding protein	psRNATarget
AK288606.1	ncRNA:24   GGA-CCAAAGGCACAAGUUGCAAAC   1   ==|-|||||||||||*||||||||* targets:2340   UUUAGGUUUCCGUGUCCAACGUUUU   2364 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090052P16, full insert sequence	NA	coding protein	psRNATarget
XM_015772621.1	ncRNA:24   GGACCAAAGGCACAAGUUGCAAAC   1   |||**|||||||||*||||||||| targets:397   CCUAAUUUCCGUGUCCAACGUUUG   420 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4332894 (LOC4332894), mRNA	uncharacterized LOC4332894(LOC4332894)	coding protein	psRNATarget
AK107240.1	ncRNA:24   GGAC---CAAAGGCACAAGUUGCAAAC   1   =*||---|||||=|||||||||||||* targets:1739   UGUGAGAGUUUCUGUGUUCAACGUUUA   1765 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:002-125-F04, full insert sequence	NA	coding protein	psRNATarget
JB164256.1	ncRNA:24   GGACCAAAGGCACAAGUUGCAAAC   1   *=*|*|||=||||||||||||||| targets:4   AUAGAUUUUCGUGUUCAACGUUUG   27 Target Full Sequence	1.0	Sequence 1920 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235925.1	ncRNA:24   GGACCAAAGGCACAAGUUGCAAAC   1   *=*|*|||=||||||||||||||| targets:4   AUAGAUUUUCGUGUUCAACGUUUG   27 Target Full Sequence	1.0	Sequence 1920 from Patent EP2985353	NA	coding protein	psRNATarget
HI403795.1	ncRNA:24   GGACCAAAGGCACAAGUUGCAAAC   1   *=*|*|||=||||||||||||||| targets:4   AUAGAUUUUCGUGUUCAACGUUUG   27 Target Full Sequence	1.0	Sequence 1920 from Patent EP2074227	NA	coding protein	psRNATarget
AK070212.1	ncRNA:24   GGACCAAAGGCACAAGUUGCAAAC   1   *=**||||||*|||*||||||||| targets:1274   AUAAGUUUCCAUGUCCAACGUUUG   1297 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023044F01, full insert sequence	NA	coding protein	psRNATarget