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BaseInfo

ncRNA ID novel_osa_miR2666
Species Oryza sativa
Class miRNA
Genome position Chr3:15577495-15577623 [-]
Reference genome IRGSP-1.0
Source SRR1849783
Length 22
Mature sequence(if miRNA) 108 - UAGGCUAUUUUGUGAGACGAAU - 129
Stem-loop(if miRNA) --                 C           U              AAUUA  GGUUGAUUACU
  UAGGCUAUUUUGUGAGA GAAUUUAAUGA GUAUAUUAAUCCAU     GC           G
  ||||||||||||||||| ||||||||||| ||||||||||||||     ||           U
  AUCCGAUAAAACGCUCU CUUAGAUUGCU CAUAUAAUUAGGUA     CG           A
GG                 A           C              CUAAA  AUGUCACUACG
Stem-loop sequence UAGGCUAUUUUGUGAGACGAAUUUAAUGAUGUAUAUUAAUCCAUAAUUAGCGGUUGAUUACUGUAGCAUCACUGUAGCAAAUCAUGGAUUAAUAUACCUCGUUAGAUUCAUCUCGCAAAAUAGCCUAGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK107263.1
ncRNA:22   UAAGCAGAGUGUUUUAUCGGAU   1
  ||||||||||=|||||||||||
targets:1182   AUUCGUCUCAUAAAAUAGCCUA   1203

1.5 Oryza sativa Japonica Group cDNA clone:002-125-H03, full insert sequence NA coding protein psRNATarget
XM_015781418.1
ncRNA:22   UAAGCAGAGUGUUUUAUCGGAU   1
  ||||||||||=|||||||||||
targets:1271   AUUCGUCUCAUAAAAUAGCCUA   1292

1.5 PREDICTED: Oryza sativa Japonica Group serine/arginine repetitive matrix protein 1 (LOC4335446), mRNA serine/arginine repetitive matrix protein 1(LOC4335446) coding protein psRNATarget